miRNA display CGI


Results 21 - 40 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 17453 0.66 0.694561
Target:  5'- cGCGGCCGgCCggCCCGaacucgACCUcCCGCcCg -3'
miRNA:   3'- -CGCCGGCaGG--GGGCga----UGGA-GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 214934 0.66 0.694561
Target:  5'- cGCGGCuuCGUCCuCCCGUgGCCgcggaCGCa- -3'
miRNA:   3'- -CGCCG--GCAGG-GGGCGaUGGag---GCGag -5'
8959 3' -63.6 NC_002512.2 + 97481 0.66 0.694561
Target:  5'- cGCGGUCGaUCCCCCcaucacguucGUccacgACUUCCGCg- -3'
miRNA:   3'- -CGCCGGC-AGGGGG----------CGa----UGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 192909 0.66 0.694561
Target:  5'- cGCGGCgGUCCagaGCcGCCUCCGa-- -3'
miRNA:   3'- -CGCCGgCAGGgggCGaUGGAGGCgag -5'
8959 3' -63.6 NC_002512.2 + 76702 0.66 0.694561
Target:  5'- uGCcGCCcUCCCcaCCGCUGCCcgCCGCc- -3'
miRNA:   3'- -CGcCGGcAGGG--GGCGAUGGa-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 146328 0.66 0.694561
Target:  5'- aCGGCCGcUCCgUCCGCaug--CCGCUCa -3'
miRNA:   3'- cGCCGGC-AGG-GGGCGauggaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 225810 0.66 0.694561
Target:  5'- gGCGGCCGgguggCCUgggaccucgagCCGCgggggAUCgagCCGCUCc -3'
miRNA:   3'- -CGCCGGCa----GGG-----------GGCGa----UGGa--GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 224408 0.66 0.694561
Target:  5'- cGCGcGCCacgagGUCCCCgaguuCUGCCcccuUCCGCUCu -3'
miRNA:   3'- -CGC-CGG-----CAGGGGgc---GAUGG----AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 149176 0.66 0.694561
Target:  5'- cGCGGgcCCGcgcgCCCUCGCcccCCggacgCCGCUCg -3'
miRNA:   3'- -CGCC--GGCa---GGGGGCGau-GGa----GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 157878 0.66 0.693631
Target:  5'- gGCGGCCuggcGUUCCuccuguaCCGCUGCCacgaCCGCa- -3'
miRNA:   3'- -CGCCGG----CAGGG-------GGCGAUGGa---GGCGag -5'
8959 3' -63.6 NC_002512.2 + 201175 0.66 0.685241
Target:  5'- uUGaGCCGggacCCCUCGCUGCa-CCGCUUc -3'
miRNA:   3'- cGC-CGGCa---GGGGGCGAUGgaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 158315 0.66 0.685241
Target:  5'- cGCGGUCGUCCggcgcgagUCCGCgcuccggACCgucuucgacacCCGCUCc -3'
miRNA:   3'- -CGCCGGCAGG--------GGGCGa------UGGa----------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 135724 0.66 0.685241
Target:  5'- gGCGGCCuUCUUCaUGCUcagggucuGCCUCCGC-Cg -3'
miRNA:   3'- -CGCCGGcAGGGG-GCGA--------UGGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 111752 0.66 0.685241
Target:  5'- cGCGGuuCCG-CCCCCGCccCCUCCcCgUCa -3'
miRNA:   3'- -CGCC--GGCaGGGGGCGauGGAGGcG-AG- -5'
8959 3' -63.6 NC_002512.2 + 44379 0.66 0.685241
Target:  5'- aGCGGCaggCCCCCGCgcaGCC-CgGCg- -3'
miRNA:   3'- -CGCCGgcaGGGGGCGa--UGGaGgCGag -5'
8959 3' -63.6 NC_002512.2 + 24382 0.66 0.685241
Target:  5'- aGUcGUCGUCCUCCGCgacGCCgucgUCCGcCUCu -3'
miRNA:   3'- -CGcCGGCAGGGGGCGa--UGG----AGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 1820 0.66 0.685241
Target:  5'- aGCccGUCGUCUCCCGCgccgcaGCCgUCCGCg- -3'
miRNA:   3'- -CGc-CGGCAGGGGGCGa-----UGG-AGGCGag -5'
8959 3' -63.6 NC_002512.2 + 197340 0.66 0.684307
Target:  5'- gGCGGCUGgagaagaUCCCCCaCUGCCcgcacgUCUGCa- -3'
miRNA:   3'- -CGCCGGC-------AGGGGGcGAUGG------AGGCGag -5'
8959 3' -63.6 NC_002512.2 + 73365 0.66 0.675884
Target:  5'- cGCcGCCGgaCCCCCGC-GCC-CCGC-Cg -3'
miRNA:   3'- -CGcCGGCa-GGGGGCGaUGGaGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 58048 0.66 0.675884
Target:  5'- cGCGGCCGgaccgUCCCgCGgUACCggaugCCGggCa -3'
miRNA:   3'- -CGCCGGC-----AGGGgGCgAUGGa----GGCgaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.