miRNA display CGI


Results 61 - 80 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 219729 0.66 0.657086
Target:  5'- gGCGGCCcccGUgCCUCGCcgACCUCUucuGCUg -3'
miRNA:   3'- -CGCCGG---CAgGGGGCGa-UGGAGG---CGAg -5'
8959 3' -63.6 NC_002512.2 + 920 0.66 0.657086
Target:  5'- uGCu-CCGUCUCCCGC--CCUCCGCc- -3'
miRNA:   3'- -CGccGGCAGGGGGCGauGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 129114 0.66 0.657086
Target:  5'- gGCgGGCgGUCCUCUGCgacuacaGCCUCgCGCa- -3'
miRNA:   3'- -CG-CCGgCAGGGGGCGa------UGGAG-GCGag -5'
8959 3' -63.6 NC_002512.2 + 75164 0.66 0.656144
Target:  5'- cGCGGacgcaacgccguuCCGUCgCgCCGCUcgacGCCggacggCCGCUCg -3'
miRNA:   3'- -CGCC-------------GGCAGgG-GGCGA----UGGa-----GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 201993 0.67 0.65143
Target:  5'- uGCGacaagcCCGUCCCUCGgUgucacuggaauugaaACCUCCGUUCc -3'
miRNA:   3'- -CGCc-----GGCAGGGGGCgA---------------UGGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 181384 0.67 0.647657
Target:  5'- cGCGcGUCGUCgUgCGCccugGCCUCCGC-Cg -3'
miRNA:   3'- -CGC-CGGCAGgGgGCGa---UGGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 180895 0.67 0.647657
Target:  5'- cGCaGGCCGUCUUCCaGCUccgcguUCUCCGC-Ca -3'
miRNA:   3'- -CG-CCGGCAGGGGG-CGAu-----GGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 96447 0.67 0.647657
Target:  5'- uGCGccaCCGUCCCCCGgaACCaaaCGCg- -3'
miRNA:   3'- -CGCc--GGCAGGGGGCgaUGGag-GCGag -5'
8959 3' -63.6 NC_002512.2 + 105965 0.67 0.647657
Target:  5'- aCGGCCaG-CCCgCCGUccACCUucCCGCUCg -3'
miRNA:   3'- cGCCGG-CaGGG-GGCGa-UGGA--GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 98842 0.67 0.647657
Target:  5'- cGCGgcGCCGuccUCCCCCGCgGCC-CCGacgccCUCg -3'
miRNA:   3'- -CGC--CGGC---AGGGGGCGaUGGaGGC-----GAG- -5'
8959 3' -63.6 NC_002512.2 + 110333 0.67 0.647657
Target:  5'- cGCGGuCCGcccggUCCCCGCU-CC-CCGCc- -3'
miRNA:   3'- -CGCC-GGCa----GGGGGCGAuGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 103443 0.67 0.647657
Target:  5'- gGCGGCCG-CCgCCGUcGCCggCCGggCg -3'
miRNA:   3'- -CGCCGGCaGGgGGCGaUGGa-GGCgaG- -5'
8959 3' -63.6 NC_002512.2 + 119386 0.67 0.647657
Target:  5'- cGCGGCgG-CCCugcugcagggCCGCgUGCCgCUGCUCg -3'
miRNA:   3'- -CGCCGgCaGGG----------GGCG-AUGGaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 223470 0.67 0.647657
Target:  5'- aCGGCCGccuUCCCCagCGCcGCCgCCGcCUCc -3'
miRNA:   3'- cGCCGGC---AGGGG--GCGaUGGaGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 96094 0.67 0.638219
Target:  5'- cGCGaCCGUCguCCCCGCcGCCgCCGUcgUCg -3'
miRNA:   3'- -CGCcGGCAG--GGGGCGaUGGaGGCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 222591 0.67 0.638219
Target:  5'- cGCGGaggaggccuguCCGgCCCCCGggGCCUCgCGCcCg -3'
miRNA:   3'- -CGCC-----------GGCaGGGGGCgaUGGAG-GCGaG- -5'
8959 3' -63.6 NC_002512.2 + 118995 0.67 0.638219
Target:  5'- uGCGGCUGgCCUCCGCcaagcGCCUCCu--- -3'
miRNA:   3'- -CGCCGGCaGGGGGCGa----UGGAGGcgag -5'
8959 3' -63.6 NC_002512.2 + 110935 0.67 0.638219
Target:  5'- cGCcGCCG-CCCCaCGCUccCCUCgaGCUCg -3'
miRNA:   3'- -CGcCGGCaGGGG-GCGAu-GGAGg-CGAG- -5'
8959 3' -63.6 NC_002512.2 + 39994 0.67 0.638219
Target:  5'- cGCcGCCGUCCUcgCCGCcGCCgucUCCGC-Cg -3'
miRNA:   3'- -CGcCGGCAGGG--GGCGaUGG---AGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 133898 0.67 0.638219
Target:  5'- cCGGCgGUCCCgggCGCUggccuACCUCCuGCUg -3'
miRNA:   3'- cGCCGgCAGGGg--GCGA-----UGGAGG-CGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.