miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 5' -55.8 NC_002512.2 + 211075 1.12 0.003144
Target:  5'- cAGGAGCUCGUCGAGCUGAACGACCGCa -3'
miRNA:   3'- -UCCUCGAGCAGCUCGACUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 156323 0.82 0.264206
Target:  5'- gGGGAGCUCGUCGAgcgGCUGcGgGACCuGCa -3'
miRNA:   3'- -UCCUCGAGCAGCU---CGACuUgCUGG-CG- -5'
8959 5' -55.8 NC_002512.2 + 185853 0.78 0.425874
Target:  5'- uGGGAGCgguaCGUCGAGgaGGGCGccucggGCCGCu -3'
miRNA:   3'- -UCCUCGa---GCAGCUCgaCUUGC------UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 63022 0.78 0.408919
Target:  5'- cAGGAGCUCGgCGAGCaggGAGCG-CCGg -3'
miRNA:   3'- -UCCUCGAGCaGCUCGa--CUUGCuGGCg -5'
8959 5' -55.8 NC_002512.2 + 148819 0.77 0.443239
Target:  5'- cGGAGCUCGUCcuggGGGCgguccGGGCGcACCGCu -3'
miRNA:   3'- uCCUCGAGCAG----CUCGa----CUUGC-UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 83148 0.77 0.443239
Target:  5'- -cGAGgUCGUCGGGCccGGCGGCCGCg -3'
miRNA:   3'- ucCUCgAGCAGCUCGacUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 124757 0.76 0.506945
Target:  5'- uGGAGCcgUCGUCG-GCccaGACGACCGCg -3'
miRNA:   3'- uCCUCG--AGCAGCuCGac-UUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 117040 0.76 0.535432
Target:  5'- cGGGAGUUCGcCGAGau-GACGGCCGUg -3'
miRNA:   3'- -UCCUCGAGCaGCUCgacUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 100278 0.76 0.52587
Target:  5'- cGGAGCUCGgCGAGCgGGGCGAguUCGUc -3'
miRNA:   3'- uCCUCGAGCaGCUCGaCUUGCU--GGCG- -5'
8959 5' -55.8 NC_002512.2 + 113250 0.75 0.574233
Target:  5'- cAGGAGcCUCGgcagCGAGggGGGCGGCCGg -3'
miRNA:   3'- -UCCUC-GAGCa---GCUCgaCUUGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 217874 0.75 0.584044
Target:  5'- gGGGAGCgCGUcCGAGaucGGCGGCCGCg -3'
miRNA:   3'- -UCCUCGaGCA-GCUCgacUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 212427 0.75 0.593887
Target:  5'- cGGGAGgUCGaguUCGGGCcGGcCGGCCGCg -3'
miRNA:   3'- -UCCUCgAGC---AGCUCGaCUuGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 123035 0.75 0.593887
Target:  5'- gAGGAGgUCGUCGAGau---CGACUGCa -3'
miRNA:   3'- -UCCUCgAGCAGCUCgacuuGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 19166 0.75 0.574233
Target:  5'- aAGG-GCUCGUCGAcGCUGAggaaGCGGgugaucucCCGCg -3'
miRNA:   3'- -UCCuCGAGCAGCU-CGACU----UGCU--------GGCG- -5'
8959 5' -55.8 NC_002512.2 + 155439 0.75 0.554733
Target:  5'- uGGAGgUCaUCGAGgUGAGCGACgCGCc -3'
miRNA:   3'- uCCUCgAGcAGCUCgACUUGCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 221120 0.74 0.643363
Target:  5'- cGGGAGCUucCGaCGGcGCUGAG-GACCGCg -3'
miRNA:   3'- -UCCUCGA--GCaGCU-CGACUUgCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 156481 0.74 0.613646
Target:  5'- cGGcGGGCUCGgCGGGCUGGGCGgacACgGCg -3'
miRNA:   3'- -UC-CUCGAGCaGCUCGACUUGC---UGgCG- -5'
8959 5' -55.8 NC_002512.2 + 123238 0.74 0.643363
Target:  5'- -cGGGCUCGacuucuUCGAGCUcGACGACCGg -3'
miRNA:   3'- ucCUCGAGC------AGCUCGAcUUGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 123569 0.74 0.643363
Target:  5'- gGGGAGagCGaCGGGCUGGACGAcgggcCCGCg -3'
miRNA:   3'- -UCCUCgaGCaGCUCGACUUGCU-----GGCG- -5'
8959 5' -55.8 NC_002512.2 + 71566 0.74 0.603756
Target:  5'- cGGAGCgCGgacUCGcGCcGGACGACCGCg -3'
miRNA:   3'- uCCUCGaGC---AGCuCGaCUUGCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.