miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
896 3' -51.1 NC_000899.1 + 14387 0.66 0.852798
Target:  5'- aUCCAGc---GGCGGcGAGGCGGAGgAg -3'
miRNA:   3'- aAGGUCucauUCGCC-UUUCGCCUUgU- -5'
896 3' -51.1 NC_000899.1 + 27579 0.66 0.834348
Target:  5'- aUCCcacaagAGAGgugcgcuuuGGCGGAAggcuAGCGGAAUAa -3'
miRNA:   3'- aAGG------UCUCau-------UCGCCUU----UCGCCUUGU- -5'
896 3' -51.1 NC_000899.1 + 7377 0.66 0.824757
Target:  5'- -cCCAuGAGcgGAGCGGAGGcCGGGGCc -3'
miRNA:   3'- aaGGU-CUCa-UUCGCCUUUcGCCUUGu -5'
896 3' -51.1 NC_000899.1 + 35651 0.67 0.794659
Target:  5'- gUCCggaAGAGUAuGCGGAGAaaauguuuGgGGAGCGa -3'
miRNA:   3'- aAGG---UCUCAUuCGCCUUU--------CgCCUUGU- -5'
896 3' -51.1 NC_000899.1 + 4393 0.67 0.784226
Target:  5'- -aCgGGGGUGAGCucuuGGGGAGCcgugaGGAACAg -3'
miRNA:   3'- aaGgUCUCAUUCG----CCUUUCG-----CCUUGU- -5'
896 3' -51.1 NC_000899.1 + 18541 0.67 0.784226
Target:  5'- ---gGGAGUcuucGGCGGGAAGCGGuuGACGc -3'
miRNA:   3'- aaggUCUCAu---UCGCCUUUCGCC--UUGU- -5'
896 3' -51.1 NC_000899.1 + 11173 0.68 0.706955
Target:  5'- uUUCUAGGGgaGGCGGGGAguacGCGGcACGg -3'
miRNA:   3'- -AAGGUCUCauUCGCCUUU----CGCCuUGU- -5'
896 3' -51.1 NC_000899.1 + 38586 0.69 0.695476
Target:  5'- gUCCuucGGUGGGCGGGgcucuggauucgGGGUGGAGCGu -3'
miRNA:   3'- aAGGuc-UCAUUCGCCU------------UUCGCCUUGU- -5'
896 3' -51.1 NC_000899.1 + 11993 0.7 0.590585
Target:  5'- cUUCgGGAG-GGGCcGggGGCGGAACGa -3'
miRNA:   3'- -AAGgUCUCaUUCGcCuuUCGCCUUGU- -5'
896 3' -51.1 NC_000899.1 + 37290 0.7 0.590585
Target:  5'- gUCCAG-GUAAaugauuuacCGGGAGGCGGAGCu -3'
miRNA:   3'- aAGGUCuCAUUc--------GCCUUUCGCCUUGu -5'
896 3' -51.1 NC_000899.1 + 5293 1.06 0.002562
Target:  5'- cUUCCAGAGUAAGCGGAAAGCGGAACAu -3'
miRNA:   3'- -AAGGUCUCAUUCGCCUUUCGCCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.