miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8960 3' -56.6 NC_002512.2 + 210735 1.06 0.005247
Target:  5'- cGAGCCCUUCGACCACGUCGAGCUCAAg -3'
miRNA:   3'- -CUCGGGAAGCUGGUGCAGCUCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 89314 0.73 0.608655
Target:  5'- -cGCCCUccgucUCGACCAgGUCGgagAGCUCGu -3'
miRNA:   3'- cuCGGGA-----AGCUGGUgCAGC---UCGAGUu -5'
8960 3' -56.6 NC_002512.2 + 227097 0.72 0.628713
Target:  5'- cGGCCgc-CGGCCGgGUCGGGCUCAGa -3'
miRNA:   3'- cUCGGgaaGCUGGUgCAGCUCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 140565 0.71 0.698585
Target:  5'- cGAGCUCUcCGACCugGUCGAGa-CGGa -3'
miRNA:   3'- -CUCGGGAaGCUGGugCAGCUCgaGUU- -5'
8960 3' -56.6 NC_002512.2 + 216863 0.71 0.727891
Target:  5'- -cGCCCUcgUCGuCCGCGUCGucGUUCAGg -3'
miRNA:   3'- cuCGGGA--AGCuGGUGCAGCu-CGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 10808 0.7 0.747045
Target:  5'- -cGUCCa-UGAgCACGUCGAGCUCGAa -3'
miRNA:   3'- cuCGGGaaGCUgGUGCAGCUCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 218305 0.7 0.756481
Target:  5'- cGGCCCUgggCGGCCGC-UCGuGCUCc- -3'
miRNA:   3'- cUCGGGAa--GCUGGUGcAGCuCGAGuu -5'
8960 3' -56.6 NC_002512.2 + 193187 0.7 0.756481
Target:  5'- -cGCCuucuuCUUCGACCGCGUCuucGGCUCGc -3'
miRNA:   3'- cuCGG-----GAAGCUGGUGCAGc--UCGAGUu -5'
8960 3' -56.6 NC_002512.2 + 137323 0.7 0.756481
Target:  5'- aGAGCgaCCUacCGGCgCugGUCGGGCUCAGu -3'
miRNA:   3'- -CUCG--GGAa-GCUG-GugCAGCUCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 21970 0.7 0.775028
Target:  5'- cGGGCCCgUUCGAgcuCCGCGUCGAGg---- -3'
miRNA:   3'- -CUCGGG-AAGCU---GGUGCAGCUCgaguu -5'
8960 3' -56.6 NC_002512.2 + 117382 0.69 0.819099
Target:  5'- -cGCCCUucUCGAUCuacuCGUCGGGCUg-- -3'
miRNA:   3'- cuCGGGA--AGCUGGu---GCAGCUCGAguu -5'
8960 3' -56.6 NC_002512.2 + 13558 0.69 0.827454
Target:  5'- cGAGCCgc-CGACCGCGUCgGGGCcgCAGa -3'
miRNA:   3'- -CUCGGgaaGCUGGUGCAG-CUCGa-GUU- -5'
8960 3' -56.6 NC_002512.2 + 39811 0.69 0.827454
Target:  5'- cGAGCCCgcugacCGGCCGCGgCcAGCUCGu -3'
miRNA:   3'- -CUCGGGaa----GCUGGUGCaGcUCGAGUu -5'
8960 3' -56.6 NC_002512.2 + 226700 0.68 0.843646
Target:  5'- -cGCCCg-CGGCgGCGUCGAGCg--- -3'
miRNA:   3'- cuCGGGaaGCUGgUGCAGCUCGaguu -5'
8960 3' -56.6 NC_002512.2 + 36436 0.68 0.844436
Target:  5'- aGGGCCCgcucccgccaccggCGGCCGCGgUCGcGCUCGu -3'
miRNA:   3'- -CUCGGGaa------------GCUGGUGC-AGCuCGAGUu -5'
8960 3' -56.6 NC_002512.2 + 99266 0.68 0.851468
Target:  5'- cGAGUCCUUCugUCGCGcCGGGCUCu- -3'
miRNA:   3'- -CUCGGGAAGcuGGUGCaGCUCGAGuu -5'
8960 3' -56.6 NC_002512.2 + 130258 0.68 0.851468
Target:  5'- cGGGCCCUccgagggcgaCGACCGCGaCGAGCgCGGg -3'
miRNA:   3'- -CUCGGGAa---------GCUGGUGCaGCUCGaGUU- -5'
8960 3' -56.6 NC_002512.2 + 24909 0.68 0.851468
Target:  5'- cGGUCCccgUCGcccGCgGCGUCGGGCUCGg -3'
miRNA:   3'- cUCGGGa--AGC---UGgUGCAGCUCGAGUu -5'
8960 3' -56.6 NC_002512.2 + 158642 0.68 0.859099
Target:  5'- cGAcCCCUUCGACCccgACGUCGAGgC-CAc -3'
miRNA:   3'- -CUcGGGAAGCUGG---UGCAGCUC-GaGUu -5'
8960 3' -56.6 NC_002512.2 + 101708 0.68 0.866533
Target:  5'- cGGCCCgcucggCGACCuCGUCcccGGGCUCGu -3'
miRNA:   3'- cUCGGGaa----GCUGGuGCAG---CUCGAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.