miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8960 3' -56.6 NC_002512.2 + 84497 0.66 0.918333
Target:  5'- gGAcCCCggaCG-CCGCGUCGGGCUCc- -3'
miRNA:   3'- -CUcGGGaa-GCuGGUGCAGCUCGAGuu -5'
8960 3' -56.6 NC_002512.2 + 119199 0.67 0.89419
Target:  5'- uGGCCCUgcggCGGCUGCG-CGAGCa--- -3'
miRNA:   3'- cUCGGGAa---GCUGGUGCaGCUCGaguu -5'
8960 3' -56.6 NC_002512.2 + 31343 0.67 0.906713
Target:  5'- -cGCCCUggcCGGCUACGaccaCGAGCUgGAg -3'
miRNA:   3'- cuCGGGAa--GCUGGUGCa---GCUCGAgUU- -5'
8960 3' -56.6 NC_002512.2 + 177867 0.67 0.906713
Target:  5'- cGGCCCauaGACCGCGgUCGAGUuauUCAc -3'
miRNA:   3'- cUCGGGaagCUGGUGC-AGCUCG---AGUu -5'
8960 3' -56.6 NC_002512.2 + 64318 0.67 0.90911
Target:  5'- -uGCCCggCcACCACGUCGccgaccuggcaguccAGCUCGAu -3'
miRNA:   3'- cuCGGGaaGcUGGUGCAGC---------------UCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 72853 0.66 0.912637
Target:  5'- cGGGUCCUcgcUCcgGGCCGCGUCGccguugucgcggGGCUCGGg -3'
miRNA:   3'- -CUCGGGA---AG--CUGGUGCAGC------------UCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 26523 0.66 0.918333
Target:  5'- uGAGCaaccgCGGCCugGUCGgcAGCUCGc -3'
miRNA:   3'- -CUCGggaa-GCUGGugCAGC--UCGAGUu -5'
8960 3' -56.6 NC_002512.2 + 106776 0.66 0.918333
Target:  5'- cGGCCCg-CGGCaCugGUCGGGgUCGGg -3'
miRNA:   3'- cUCGGGaaGCUG-GugCAGCUCgAGUU- -5'
8960 3' -56.6 NC_002512.2 + 98467 0.66 0.918333
Target:  5'- gGAGCCCgccgUC-ACCGUGUCGcAGCUCu- -3'
miRNA:   3'- -CUCGGGa---AGcUGGUGCAGC-UCGAGuu -5'
8960 3' -56.6 NC_002512.2 + 127600 0.68 0.873763
Target:  5'- -cGCCCUggcggUCGACgCGCGcCGAGC-CGAg -3'
miRNA:   3'- cuCGGGA-----AGCUG-GUGCaGCUCGaGUU- -5'
8960 3' -56.6 NC_002512.2 + 112883 0.68 0.873763
Target:  5'- cGGCCCggCGuucucgucggucGCCGCGUCGcggaccAGCUCGAu -3'
miRNA:   3'- cUCGGGaaGC------------UGGUGCAGC------UCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 21653 0.68 0.866533
Target:  5'- cGGGCCUUcuccUCGuCCAUGUCgGAGaCUCAAa -3'
miRNA:   3'- -CUCGGGA----AGCuGGUGCAG-CUC-GAGUU- -5'
8960 3' -56.6 NC_002512.2 + 10808 0.7 0.747045
Target:  5'- -cGUCCa-UGAgCACGUCGAGCUCGAa -3'
miRNA:   3'- cuCGGGaaGCUgGUGCAGCUCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 21970 0.7 0.775028
Target:  5'- cGGGCCCgUUCGAgcuCCGCGUCGAGg---- -3'
miRNA:   3'- -CUCGGG-AAGCU---GGUGCAGCUCgaguu -5'
8960 3' -56.6 NC_002512.2 + 39811 0.69 0.827454
Target:  5'- cGAGCCCgcugacCGGCCGCGgCcAGCUCGu -3'
miRNA:   3'- -CUCGGGaa----GCUGGUGCaGcUCGAGUu -5'
8960 3' -56.6 NC_002512.2 + 13558 0.69 0.827454
Target:  5'- cGAGCCgc-CGACCGCGUCgGGGCcgCAGa -3'
miRNA:   3'- -CUCGGgaaGCUGGUGCAG-CUCGa-GUU- -5'
8960 3' -56.6 NC_002512.2 + 36436 0.68 0.844436
Target:  5'- aGGGCCCgcucccgccaccggCGGCCGCGgUCGcGCUCGu -3'
miRNA:   3'- -CUCGGGaa------------GCUGGUGC-AGCuCGAGUu -5'
8960 3' -56.6 NC_002512.2 + 24909 0.68 0.851468
Target:  5'- cGGUCCccgUCGcccGCgGCGUCGGGCUCGg -3'
miRNA:   3'- cUCGGGa--AGC---UGgUGCAGCUCGAGUu -5'
8960 3' -56.6 NC_002512.2 + 99266 0.68 0.851468
Target:  5'- cGAGUCCUUCugUCGCGcCGGGCUCu- -3'
miRNA:   3'- -CUCGGGAAGcuGGUGCaGCUCGAGuu -5'
8960 3' -56.6 NC_002512.2 + 130258 0.68 0.851468
Target:  5'- cGGGCCCUccgagggcgaCGACCGCGaCGAGCgCGGg -3'
miRNA:   3'- -CUCGGGAa---------GCUGGUGCaGCUCGaGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.