miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8960 5' -54.1 NC_002512.2 + 129318 0.66 0.982909
Target:  5'- -----cGAGCGCccgGCGCUucugCGUCACGGa -3'
miRNA:   3'- agaguuCUUGCG---CGCGAa---GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 128112 0.66 0.980938
Target:  5'- -gUCGAGGACG-GCGCcgucUCGCCgaaggucagGCGGc -3'
miRNA:   3'- agAGUUCUUGCgCGCGa---AGCGG---------UGCC- -5'
8960 5' -54.1 NC_002512.2 + 130135 0.66 0.982909
Target:  5'- --cCGGGGugGUGuCGCg--GCCGCGGg -3'
miRNA:   3'- agaGUUCUugCGC-GCGaagCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 117552 0.66 0.982909
Target:  5'- gCUCGAGAACGUGCuccucaaggaGCUgaccuaCGUCAcCGGc -3'
miRNA:   3'- aGAGUUCUUGCGCG----------CGAa-----GCGGU-GCC- -5'
8960 5' -54.1 NC_002512.2 + 125203 0.66 0.986385
Target:  5'- aCUCcGGu-CGCGCGUgUCGUCGuCGGu -3'
miRNA:   3'- aGAGuUCuuGCGCGCGaAGCGGU-GCC- -5'
8960 5' -54.1 NC_002512.2 + 135245 0.66 0.987905
Target:  5'- cCUCGAGGccgucguccGCGcCGCGCUcgacgagGCCugGGc -3'
miRNA:   3'- aGAGUUCU---------UGC-GCGCGAag-----CGGugCC- -5'
8960 5' -54.1 NC_002512.2 + 7427 0.66 0.982909
Target:  5'- --gCGAGGGCcgGCGCGaggUUgGCCGCGGc -3'
miRNA:   3'- agaGUUCUUG--CGCGCg--AAgCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 7746 0.66 0.986385
Target:  5'- cCUCGGGGGCGgaGCcgggGCgguagUCGgCCGCGGa -3'
miRNA:   3'- aGAGUUCUUGCg-CG----CGa----AGC-GGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 43049 0.66 0.987905
Target:  5'- cCUCGGcGACGCGCaggGCcUCGCCGaGGc -3'
miRNA:   3'- aGAGUUcUUGCGCG---CGaAGCGGUgCC- -5'
8960 5' -54.1 NC_002512.2 + 110841 0.66 0.980938
Target:  5'- -aUCAGGAGCaG-GCGCUgguugaucuccgUCGCCAgCGGc -3'
miRNA:   3'- agAGUUCUUG-CgCGCGA------------AGCGGU-GCC- -5'
8960 5' -54.1 NC_002512.2 + 84307 0.66 0.983097
Target:  5'- -aUCAGGuaguugcggcgcguCGCGCGCcgcagcgUCGCCGCGu -3'
miRNA:   3'- agAGUUCuu------------GCGCGCGa------AGCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 109907 0.66 0.98214
Target:  5'- cCUCGucGGcguCGCGCGCguucggccccagCGCCACGa -3'
miRNA:   3'- aGAGU--UCuu-GCGCGCGaa----------GCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 21049 0.66 0.984722
Target:  5'- --aCAGGAACG-GCGCggCGCgugagggcgCACGGg -3'
miRNA:   3'- agaGUUCUUGCgCGCGaaGCG---------GUGCC- -5'
8960 5' -54.1 NC_002512.2 + 60908 0.66 0.981142
Target:  5'- gCUCGGucGAGCGgacaccgaccgcgaaGCGCUUCGCguCGGa -3'
miRNA:   3'- aGAGUU--CUUGCg--------------CGCGAAGCGguGCC- -5'
8960 5' -54.1 NC_002512.2 + 113869 0.66 0.987905
Target:  5'- cUCUCGGGugguguaGuCGUGCUUCGCCuCGu -3'
miRNA:   3'- -AGAGUUCuug----C-GCGCGAAGCGGuGCc -5'
8960 5' -54.1 NC_002512.2 + 102736 0.66 0.982909
Target:  5'- cUUCGacccGGAGCGCGCGCc---CUACGGa -3'
miRNA:   3'- aGAGU----UCUUGCGCGCGaagcGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 112548 0.66 0.987905
Target:  5'- cUCgugCGAGAACGC-CGg--CGCCAgCGGg -3'
miRNA:   3'- -AGa--GUUCUUGCGcGCgaaGCGGU-GCC- -5'
8960 5' -54.1 NC_002512.2 + 16198 0.66 0.986385
Target:  5'- gUUCGAGGAcCGCGgGCgaCGCCG-GGc -3'
miRNA:   3'- aGAGUUCUU-GCGCgCGaaGCGGUgCC- -5'
8960 5' -54.1 NC_002512.2 + 10759 0.66 0.987905
Target:  5'- ----uAGAGCGCGUcgucgGCccCGCCGCGGu -3'
miRNA:   3'- agaguUCUUGCGCG-----CGaaGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 101018 0.66 0.985901
Target:  5'- cCUCAgcaggcgcagcaccAGGGCcCGCGCggCGCCcgaGCGGu -3'
miRNA:   3'- aGAGU--------------UCUUGcGCGCGaaGCGG---UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.