miRNA display CGI


Results 1 - 20 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8960 5' -54.1 NC_002512.2 + 210770 1.11 0.005953
Target:  5'- aUCUCAAGAACGCGCGCUUCGCCACGGc -3'
miRNA:   3'- -AGAGUUCUUGCGCGCGAAGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 78866 0.81 0.362361
Target:  5'- cCUCGAGGugGCuCGCgUCGCCAUGGa -3'
miRNA:   3'- aGAGUUCUugCGcGCGaAGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 79054 0.81 0.378194
Target:  5'- aUCUCGGGGaaGCGCgGCGCggUCGUCACGGc -3'
miRNA:   3'- -AGAGUUCU--UGCG-CGCGa-AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 145553 0.78 0.501016
Target:  5'- gCUCGAGGACGCG-GCgaCGCUGCGGc -3'
miRNA:   3'- aGAGUUCUUGCGCgCGaaGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 183953 0.78 0.539314
Target:  5'- gCUCccGGGACGCGCGCUcgggcgucgUCGCCuguCGGg -3'
miRNA:   3'- aGAGu-UCUUGCGCGCGA---------AGCGGu--GCC- -5'
8960 5' -54.1 NC_002512.2 + 30416 0.77 0.558838
Target:  5'- --aCGGGGACGCGgGCgUCGUCGCGGc -3'
miRNA:   3'- agaGUUCUUGCGCgCGaAGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 202184 0.77 0.568675
Target:  5'- aCggGAGAACGCGCGUUccggaUCGCCgACGGa -3'
miRNA:   3'- aGagUUCUUGCGCGCGA-----AGCGG-UGCC- -5'
8960 5' -54.1 NC_002512.2 + 99782 0.77 0.568675
Target:  5'- cCUCAAGGGCGCGCcCUUCacucgGCCGuCGGg -3'
miRNA:   3'- aGAGUUCUUGCGCGcGAAG-----CGGU-GCC- -5'
8960 5' -54.1 NC_002512.2 + 113133 0.77 0.586487
Target:  5'- cCUCgGAGAcCGCGCGCggggcgccggccUCGCCGCGGc -3'
miRNA:   3'- aGAG-UUCUuGCGCGCGa-----------AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 184857 0.77 0.588473
Target:  5'- cCUCGGGuccaccgucAGCGUGCGCUgcuacUGCCACGGg -3'
miRNA:   3'- aGAGUUC---------UUGCGCGCGAa----GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 129429 0.76 0.598419
Target:  5'- --cCGAGAACGCGCuCUUCGCCGucgccCGGa -3'
miRNA:   3'- agaGUUCUUGCGCGcGAAGCGGU-----GCC- -5'
8960 5' -54.1 NC_002512.2 + 33639 0.76 0.618378
Target:  5'- --gCGAGAgGCGCGCGCgggCGCgGCGGa -3'
miRNA:   3'- agaGUUCU-UGCGCGCGaa-GCGgUGCC- -5'
8960 5' -54.1 NC_002512.2 + 150670 0.75 0.678254
Target:  5'- cCUCGAGGuccGCGgGCGCggcggUCGCCccgACGGa -3'
miRNA:   3'- aGAGUUCU---UGCgCGCGa----AGCGG---UGCC- -5'
8960 5' -54.1 NC_002512.2 + 185188 0.74 0.717551
Target:  5'- uUCUcCGAGAACGCG-GCggcggucgaCGCCGCGGu -3'
miRNA:   3'- -AGA-GUUCUUGCGCgCGaa-------GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 211347 0.74 0.727223
Target:  5'- gCUgGGGGACGCGCGCggccugacCGCC-CGGc -3'
miRNA:   3'- aGAgUUCUUGCGCGCGaa------GCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 5480 0.74 0.736815
Target:  5'- aCUCGGGGACcucgugGCGCGCguccgCGCCGgGGu -3'
miRNA:   3'- aGAGUUCUUG------CGCGCGaa---GCGGUgCC- -5'
8960 5' -54.1 NC_002512.2 + 95671 0.73 0.755731
Target:  5'- cUCUCGuGAGCGCGCGUc-CGCCgggccuccgGCGGg -3'
miRNA:   3'- -AGAGUuCUUGCGCGCGaaGCGG---------UGCC- -5'
8960 5' -54.1 NC_002512.2 + 154138 0.73 0.765038
Target:  5'- gUCUCc--GACGCGCGCUcggUCGCCucccguucgGCGGa -3'
miRNA:   3'- -AGAGuucUUGCGCGCGA---AGCGG---------UGCC- -5'
8960 5' -54.1 NC_002512.2 + 164739 0.73 0.774231
Target:  5'- -gUCGAGGACcgguaGCGCGC--CGCCAUGGa -3'
miRNA:   3'- agAGUUCUUG-----CGCGCGaaGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 146820 0.73 0.774231
Target:  5'- cCUgGAGAccuuCGCGCGCgaggUCGCCugGc -3'
miRNA:   3'- aGAgUUCUu---GCGCGCGa---AGCGGugCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.