Results 1 - 20 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8960 | 5' | -54.1 | NC_002512.2 | + | 2093 | 0.67 | 0.978802 |
Target: 5'- --gCGGGAGCGgGCGgUaCGgCCGCGGc -3' miRNA: 3'- agaGUUCUUGCgCGCgAaGC-GGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 5480 | 0.74 | 0.736815 |
Target: 5'- aCUCGGGGACcucgugGCGCGCguccgCGCCGgGGu -3' miRNA: 3'- aGAGUUCUUG------CGCGCGaa---GCGGUgCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 7427 | 0.66 | 0.982909 |
Target: 5'- --gCGAGGGCcgGCGCGaggUUgGCCGCGGc -3' miRNA: 3'- agaGUUCUUG--CGCGCg--AAgCGGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 7746 | 0.66 | 0.986385 |
Target: 5'- cCUCGGGGGCGgaGCcgggGCgguagUCGgCCGCGGa -3' miRNA: 3'- aGAGUUCUUGCg-CG----CGa----AGC-GGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 10759 | 0.66 | 0.987905 |
Target: 5'- ----uAGAGCGCGUcgucgGCccCGCCGCGGu -3' miRNA: 3'- agaguUCUUGCGCG-----CGaaGCGGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 11262 | 0.67 | 0.974006 |
Target: 5'- --aCAGGGucccgACGCGCGUccUUCGaguCCGCGGg -3' miRNA: 3'- agaGUUCU-----UGCGCGCG--AAGC---GGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 11789 | 0.67 | 0.978802 |
Target: 5'- --cCGGGcgcGACGCcCGCUUCcCCACGGa -3' miRNA: 3'- agaGUUC---UUGCGcGCGAAGcGGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 13365 | 0.69 | 0.92295 |
Target: 5'- aCUCGGGcGCGUuCGUggUGCCGCGGu -3' miRNA: 3'- aGAGUUCuUGCGcGCGaaGCGGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 15945 | 0.72 | 0.842731 |
Target: 5'- aUUCAAGGACaucaGCGCgGCgacucgcacUCGCCGCGGu -3' miRNA: 3'- aGAGUUCUUG----CGCG-CGa--------AGCGGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 16198 | 0.66 | 0.986385 |
Target: 5'- gUUCGAGGAcCGCGgGCgaCGCCG-GGc -3' miRNA: 3'- aGAGUUCUU-GCGCgCGaaGCGGUgCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 18540 | 0.67 | 0.974006 |
Target: 5'- -gUCAGGc-CGCGCGCgucccccagCGCC-CGGg -3' miRNA: 3'- agAGUUCuuGCGCGCGaa-------GCGGuGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 21049 | 0.66 | 0.984722 |
Target: 5'- --aCAGGAACG-GCGCggCGCgugagggcgCACGGg -3' miRNA: 3'- agaGUUCUUGCgCGCGaaGCG---------GUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 24705 | 0.67 | 0.978802 |
Target: 5'- -gUCGAGGACGCGgGCgagggagaCGCgGCGu -3' miRNA: 3'- agAGUUCUUGCGCgCGaa------GCGgUGCc -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 26737 | 0.67 | 0.971333 |
Target: 5'- -gUCGccGGCGC-CGCUguaCGCCACGGu -3' miRNA: 3'- agAGUucUUGCGcGCGAa--GCGGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 27704 | 0.7 | 0.89966 |
Target: 5'- -aUCcGGAACGCGCGUUcuccCGUCACGa -3' miRNA: 3'- agAGuUCUUGCGCGCGAa---GCGGUGCc -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 30265 | 0.67 | 0.974006 |
Target: 5'- --cCGcGGACGCGCGgagccggCGCCAUGGa -3' miRNA: 3'- agaGUuCUUGCGCGCgaa----GCGGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 30416 | 0.77 | 0.558838 |
Target: 5'- --aCGGGGACGCGgGCgUCGUCGCGGc -3' miRNA: 3'- agaGUUCUUGCGCgCGaAGCGGUGCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 31755 | 0.68 | 0.965405 |
Target: 5'- ----cGGGGCuCGCGCUUCGCCAaccucaaGGg -3' miRNA: 3'- agaguUCUUGcGCGCGAAGCGGUg------CC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 33071 | 0.69 | 0.92295 |
Target: 5'- cUCUCAaaAGAccgGCGCGCGCg--GUCAuCGGg -3' miRNA: 3'- -AGAGU--UCU---UGCGCGCGaagCGGU-GCC- -5' |
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8960 | 5' | -54.1 | NC_002512.2 | + | 33608 | 0.71 | 0.858174 |
Target: 5'- cUUCAAGAugcCGUccGCGCUUCcGCCGCGa -3' miRNA: 3'- aGAGUUCUu--GCG--CGCGAAG-CGGUGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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