miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8960 5' -54.1 NC_002512.2 + 2093 0.67 0.978802
Target:  5'- --gCGGGAGCGgGCGgUaCGgCCGCGGc -3'
miRNA:   3'- agaGUUCUUGCgCGCgAaGC-GGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 5480 0.74 0.736815
Target:  5'- aCUCGGGGACcucgugGCGCGCguccgCGCCGgGGu -3'
miRNA:   3'- aGAGUUCUUG------CGCGCGaa---GCGGUgCC- -5'
8960 5' -54.1 NC_002512.2 + 7427 0.66 0.982909
Target:  5'- --gCGAGGGCcgGCGCGaggUUgGCCGCGGc -3'
miRNA:   3'- agaGUUCUUG--CGCGCg--AAgCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 7746 0.66 0.986385
Target:  5'- cCUCGGGGGCGgaGCcgggGCgguagUCGgCCGCGGa -3'
miRNA:   3'- aGAGUUCUUGCg-CG----CGa----AGC-GGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 10759 0.66 0.987905
Target:  5'- ----uAGAGCGCGUcgucgGCccCGCCGCGGu -3'
miRNA:   3'- agaguUCUUGCGCG-----CGaaGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 11262 0.67 0.974006
Target:  5'- --aCAGGGucccgACGCGCGUccUUCGaguCCGCGGg -3'
miRNA:   3'- agaGUUCU-----UGCGCGCG--AAGC---GGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 11789 0.67 0.978802
Target:  5'- --cCGGGcgcGACGCcCGCUUCcCCACGGa -3'
miRNA:   3'- agaGUUC---UUGCGcGCGAAGcGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 13365 0.69 0.92295
Target:  5'- aCUCGGGcGCGUuCGUggUGCCGCGGu -3'
miRNA:   3'- aGAGUUCuUGCGcGCGaaGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 15945 0.72 0.842731
Target:  5'- aUUCAAGGACaucaGCGCgGCgacucgcacUCGCCGCGGu -3'
miRNA:   3'- aGAGUUCUUG----CGCG-CGa--------AGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 16198 0.66 0.986385
Target:  5'- gUUCGAGGAcCGCGgGCgaCGCCG-GGc -3'
miRNA:   3'- aGAGUUCUU-GCGCgCGaaGCGGUgCC- -5'
8960 5' -54.1 NC_002512.2 + 18540 0.67 0.974006
Target:  5'- -gUCAGGc-CGCGCGCgucccccagCGCC-CGGg -3'
miRNA:   3'- agAGUUCuuGCGCGCGaa-------GCGGuGCC- -5'
8960 5' -54.1 NC_002512.2 + 21049 0.66 0.984722
Target:  5'- --aCAGGAACG-GCGCggCGCgugagggcgCACGGg -3'
miRNA:   3'- agaGUUCUUGCgCGCGaaGCG---------GUGCC- -5'
8960 5' -54.1 NC_002512.2 + 24705 0.67 0.978802
Target:  5'- -gUCGAGGACGCGgGCgagggagaCGCgGCGu -3'
miRNA:   3'- agAGUUCUUGCGCgCGaa------GCGgUGCc -5'
8960 5' -54.1 NC_002512.2 + 26737 0.67 0.971333
Target:  5'- -gUCGccGGCGC-CGCUguaCGCCACGGu -3'
miRNA:   3'- agAGUucUUGCGcGCGAa--GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 27704 0.7 0.89966
Target:  5'- -aUCcGGAACGCGCGUUcuccCGUCACGa -3'
miRNA:   3'- agAGuUCUUGCGCGCGAa---GCGGUGCc -5'
8960 5' -54.1 NC_002512.2 + 30265 0.67 0.974006
Target:  5'- --cCGcGGACGCGCGgagccggCGCCAUGGa -3'
miRNA:   3'- agaGUuCUUGCGCGCgaa----GCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 30416 0.77 0.558838
Target:  5'- --aCGGGGACGCGgGCgUCGUCGCGGc -3'
miRNA:   3'- agaGUUCUUGCGCgCGaAGCGGUGCC- -5'
8960 5' -54.1 NC_002512.2 + 31755 0.68 0.965405
Target:  5'- ----cGGGGCuCGCGCUUCGCCAaccucaaGGg -3'
miRNA:   3'- agaguUCUUGcGCGCGAAGCGGUg------CC- -5'
8960 5' -54.1 NC_002512.2 + 33071 0.69 0.92295
Target:  5'- cUCUCAaaAGAccgGCGCGCGCg--GUCAuCGGg -3'
miRNA:   3'- -AGAGU--UCU---UGCGCGCGaagCGGU-GCC- -5'
8960 5' -54.1 NC_002512.2 + 33608 0.71 0.858174
Target:  5'- cUUCAAGAugcCGUccGCGCUUCcGCCGCGa -3'
miRNA:   3'- aGAGUUCUu--GCG--CGCGAAG-CGGUGCc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.