miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 3' -58.4 NC_002512.2 + 17799 0.66 0.871317
Target:  5'- gGCGAGcACGCgCUCGuCGUacaggCGGCg- -3'
miRNA:   3'- aCGCUCaUGCG-GAGC-GCAga---GCCGaa -5'
8961 3' -58.4 NC_002512.2 + 28257 0.67 0.833466
Target:  5'- cGCGAGUacgacgGCGCCUaC-CG-CUCGGCg- -3'
miRNA:   3'- aCGCUCA------UGCGGA-GcGCaGAGCCGaa -5'
8961 3' -58.4 NC_002512.2 + 74657 0.68 0.773523
Target:  5'- gGCGGG-ACgGCCgcgggCGCGUUUCGGUUc -3'
miRNA:   3'- aCGCUCaUG-CGGa----GCGCAGAGCCGAa -5'
8961 3' -58.4 NC_002512.2 + 75570 0.66 0.871317
Target:  5'- gGCGGGgcCGCCgccgUCGCGgUCgacguggCGGCUUu -3'
miRNA:   3'- aCGCUCauGCGG----AGCGC-AGa------GCCGAA- -5'
8961 3' -58.4 NC_002512.2 + 77822 0.69 0.717455
Target:  5'- aGCGAGUACGUgCUCGaCGcCgggCGGCa- -3'
miRNA:   3'- aCGCUCAUGCG-GAGC-GCaGa--GCCGaa -5'
8961 3' -58.4 NC_002512.2 + 79606 0.69 0.707824
Target:  5'- cGCGGGcggcaGCGCCgggUCGCGguaCUCGGCg- -3'
miRNA:   3'- aCGCUCa----UGCGG---AGCGCa--GAGCCGaa -5'
8961 3' -58.4 NC_002512.2 + 80797 0.67 0.808657
Target:  5'- cGCGAGgaggaggaGCGCgCgCGCGcCUCGGCg- -3'
miRNA:   3'- aCGCUCa-------UGCG-GaGCGCaGAGCCGaa -5'
8961 3' -58.4 NC_002512.2 + 82120 0.67 0.825358
Target:  5'- cGCGAGUcgggacggccGCGCUggCGCacGUCUCGGUc- -3'
miRNA:   3'- aCGCUCA----------UGCGGa-GCG--CAGAGCCGaa -5'
8961 3' -58.4 NC_002512.2 + 82356 0.68 0.800078
Target:  5'- aGCGuuucGCGCCUCGCGccgggaUCGGCg- -3'
miRNA:   3'- aCGCuca-UGCGGAGCGCag----AGCCGaa -5'
8961 3' -58.4 NC_002512.2 + 96065 0.67 0.833466
Target:  5'- gGCG-GUACGaCUCGgcCGUCUCGGUc- -3'
miRNA:   3'- aCGCuCAUGCgGAGC--GCAGAGCCGaa -5'
8961 3' -58.4 NC_002512.2 + 103458 0.76 0.357928
Target:  5'- cGCGGGUccgaggacGCGgCUCGgGUCUCGGCg- -3'
miRNA:   3'- aCGCUCA--------UGCgGAGCgCAGAGCCGaa -5'
8961 3' -58.4 NC_002512.2 + 106677 0.74 0.466536
Target:  5'- aGCGucGGUACGCgUCGCGgugUUCGGCg- -3'
miRNA:   3'- aCGC--UCAUGCGgAGCGCa--GAGCCGaa -5'
8961 3' -58.4 NC_002512.2 + 111099 0.69 0.745908
Target:  5'- aUGCGGGUGCGCacccgCGCGUaguccCUCuGCUUg -3'
miRNA:   3'- -ACGCUCAUGCGga---GCGCA-----GAGcCGAA- -5'
8961 3' -58.4 NC_002512.2 + 114421 0.7 0.667797
Target:  5'- cUGCGAGcucUGCGCCagccgguUCGCGUgaUCGGCg- -3'
miRNA:   3'- -ACGCUC---AUGCGG-------AGCGCAg-AGCCGaa -5'
8961 3' -58.4 NC_002512.2 + 116744 0.71 0.639178
Target:  5'- gGCGAGgccgGCGCCccgcgCGCGUCUCcgaggagaGGCa- -3'
miRNA:   3'- aCGCUCa---UGCGGa----GCGCAGAG--------CCGaa -5'
8961 3' -58.4 NC_002512.2 + 123478 0.74 0.46294
Target:  5'- cGCGGuGUGCGUCUCGCGgguccagggggugCUCGGCc- -3'
miRNA:   3'- aCGCU-CAUGCGGAGCGCa------------GAGCCGaa -5'
8961 3' -58.4 NC_002512.2 + 126508 0.67 0.849163
Target:  5'- cGCGA--GCGCCUCGgCGgCUcCGGCg- -3'
miRNA:   3'- aCGCUcaUGCGGAGC-GCaGA-GCCGaa -5'
8961 3' -58.4 NC_002512.2 + 128260 0.66 0.871317
Target:  5'- -uCGAGcgGCGaCUCGCGUCcCGGCg- -3'
miRNA:   3'- acGCUCa-UGCgGAGCGCAGaGCCGaa -5'
8961 3' -58.4 NC_002512.2 + 128297 0.66 0.856739
Target:  5'- gUGCGGGUgcACGCC-CGaGUCgCGGCa- -3'
miRNA:   3'- -ACGCUCA--UGCGGaGCgCAGaGCCGaa -5'
8961 3' -58.4 NC_002512.2 + 128691 0.67 0.808657
Target:  5'- gGCGA--ACGCCg-GCGUCUCGGaCa- -3'
miRNA:   3'- aCGCUcaUGCGGagCGCAGAGCC-Gaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.