Results 1 - 20 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8961 | 3' | -58.4 | NC_002512.2 | + | 123478 | 0.74 | 0.46294 |
Target: 5'- cGCGGuGUGCGUCUCGCGgguccagggggugCUCGGCc- -3' miRNA: 3'- aCGCU-CAUGCGGAGCGCa------------GAGCCGaa -5' |
|||||||
8961 | 3' | -58.4 | NC_002512.2 | + | 136186 | 0.66 | 0.885095 |
Target: 5'- gGCGGGguCGCCgggaUCGCGUCgacgcCGGCg- -3' miRNA: 3'- aCGCUCauGCGG----AGCGCAGa----GCCGaa -5' |
|||||||
8961 | 3' | -58.4 | NC_002512.2 | + | 75570 | 0.66 | 0.871317 |
Target: 5'- gGCGGGgcCGCCgccgUCGCGgUCgacguggCGGCUUu -3' miRNA: 3'- aCGCUCauGCGG----AGCGC-AGa------GCCGAA- -5' |
|||||||
8961 | 3' | -58.4 | NC_002512.2 | + | 17799 | 0.66 | 0.871317 |
Target: 5'- gGCGAGcACGCgCUCGuCGUacaggCGGCg- -3' miRNA: 3'- aCGCUCaUGCG-GAGC-GCAga---GCCGaa -5' |
|||||||
8961 | 3' | -58.4 | NC_002512.2 | + | 128297 | 0.66 | 0.856739 |
Target: 5'- gUGCGGGUgcACGCC-CGaGUCgCGGCa- -3' miRNA: 3'- -ACGCUCA--UGCGGaGCgCAGaGCCGaa -5' |
|||||||
8961 | 3' | -58.4 | NC_002512.2 | + | 126508 | 0.67 | 0.849163 |
Target: 5'- cGCGA--GCGCCUCGgCGgCUcCGGCg- -3' miRNA: 3'- aCGCUcaUGCGGAGC-GCaGA-GCCGaa -5' |
|||||||
8961 | 3' | -58.4 | NC_002512.2 | + | 28257 | 0.67 | 0.833466 |
Target: 5'- cGCGAGUacgacgGCGCCUaC-CG-CUCGGCg- -3' miRNA: 3'- aCGCUCA------UGCGGA-GcGCaGAGCCGaa -5' |
|||||||
8961 | 3' | -58.4 | NC_002512.2 | + | 96065 | 0.67 | 0.833466 |
Target: 5'- gGCG-GUACGaCUCGgcCGUCUCGGUc- -3' miRNA: 3'- aCGCuCAUGCgGAGC--GCAGAGCCGaa -5' |
|||||||
8961 | 3' | -58.4 | NC_002512.2 | + | 80797 | 0.67 | 0.808657 |
Target: 5'- cGCGAGgaggaggaGCGCgCgCGCGcCUCGGCg- -3' miRNA: 3'- aCGCUCa-------UGCG-GaGCGCaGAGCCGaa -5' |
|||||||
8961 | 3' | -58.4 | NC_002512.2 | + | 111099 | 0.69 | 0.745908 |
Target: 5'- aUGCGGGUGCGCacccgCGCGUaguccCUCuGCUUg -3' miRNA: 3'- -ACGCUCAUGCGga---GCGCA-----GAGcCGAA- -5' |
|||||||
8961 | 3' | -58.4 | NC_002512.2 | + | 79606 | 0.69 | 0.707824 |
Target: 5'- cGCGGGcggcaGCGCCgggUCGCGguaCUCGGCg- -3' miRNA: 3'- aCGCUCa----UGCGG---AGCGCa--GAGCCGaa -5' |
|||||||
8961 | 3' | -58.4 | NC_002512.2 | + | 114421 | 0.7 | 0.667797 |
Target: 5'- cUGCGAGcucUGCGCCagccgguUCGCGUgaUCGGCg- -3' miRNA: 3'- -ACGCUC---AUGCGG-------AGCGCAg-AGCCGaa -5' |
|||||||
8961 | 3' | -58.4 | NC_002512.2 | + | 116744 | 0.71 | 0.639178 |
Target: 5'- gGCGAGgccgGCGCCccgcgCGCGUCUCcgaggagaGGCa- -3' miRNA: 3'- aCGCUCa---UGCGGa----GCGCAGAG--------CCGaa -5' |
|||||||
8961 | 3' | -58.4 | NC_002512.2 | + | 106677 | 0.74 | 0.466536 |
Target: 5'- aGCGucGGUACGCgUCGCGgugUUCGGCg- -3' miRNA: 3'- aCGC--UCAUGCGgAGCGCa--GAGCCGaa -5' |
|||||||
8961 | 3' | -58.4 | NC_002512.2 | + | 128260 | 0.66 | 0.871317 |
Target: 5'- -uCGAGcgGCGaCUCGCGUCcCGGCg- -3' miRNA: 3'- acGCUCa-UGCgGAGCGCAGaGCCGaa -5' |
|||||||
8961 | 3' | -58.4 | NC_002512.2 | + | 196256 | 0.66 | 0.878308 |
Target: 5'- cGCGc--GCGCCUCuCGcCUCGGCg- -3' miRNA: 3'- aCGCucaUGCGGAGcGCaGAGCCGaa -5' |
|||||||
8961 | 3' | -58.4 | NC_002512.2 | + | 193898 | 0.66 | 0.885095 |
Target: 5'- aGCGGGU-CGCCgcggucggcggaUCGCGUCcCGGaCUc -3' miRNA: 3'- aCGCUCAuGCGG------------AGCGCAGaGCC-GAa -5' |
|||||||
8961 | 3' | -58.4 | NC_002512.2 | + | 207872 | 0.66 | 0.891672 |
Target: 5'- aGCGAGUccggggACGgCUUcugGCGcUCUCGGCg- -3' miRNA: 3'- aCGCUCA------UGCgGAG---CGC-AGAGCCGaa -5' |
|||||||
8961 | 3' | -58.4 | NC_002512.2 | + | 193252 | 0.66 | 0.891672 |
Target: 5'- gGCGGuucUACGCCUgCGCGcccugcCUCGGCg- -3' miRNA: 3'- aCGCUc--AUGCGGA-GCGCa-----GAGCCGaa -5' |
|||||||
8961 | 3' | -58.4 | NC_002512.2 | + | 210639 | 1.04 | 0.004965 |
Target: 5'- cUGCGAGUACGCCUCGCGUCUCGGCUUc -3' miRNA: 3'- -ACGCUCAUGCGGAGCGCAGAGCCGAA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home