miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 3' -58.4 NC_002512.2 + 128691 0.67 0.808657
Target:  5'- gGCGA--ACGCCg-GCGUCUCGGaCa- -3'
miRNA:   3'- aCGCUcaUGCGGagCGCAGAGCC-Gaa -5'
8961 3' -58.4 NC_002512.2 + 80797 0.67 0.808657
Target:  5'- cGCGAGgaggaggaGCGCgCgCGCGcCUCGGCg- -3'
miRNA:   3'- aCGCUCa-------UGCG-GaGCGCaGAGCCGaa -5'
8961 3' -58.4 NC_002512.2 + 82356 0.68 0.800078
Target:  5'- aGCGuuucGCGCCUCGCGccgggaUCGGCg- -3'
miRNA:   3'- aCGCuca-UGCGGAGCGCag----AGCCGaa -5'
8961 3' -58.4 NC_002512.2 + 221844 0.68 0.782503
Target:  5'- cGCGGGgGCGCCUCGgGaccgggaccUCUCGGa-- -3'
miRNA:   3'- aCGCUCaUGCGGAGCgC---------AGAGCCgaa -5'
8961 3' -58.4 NC_002512.2 + 74657 0.68 0.773523
Target:  5'- gGCGGG-ACgGCCgcgggCGCGUUUCGGUUc -3'
miRNA:   3'- aCGCUCaUG-CGGa----GCGCAGAGCCGAa -5'
8961 3' -58.4 NC_002512.2 + 189912 0.68 0.773523
Target:  5'- gGCGAGgacgGCGgCUcCG-GUCUCGGCg- -3'
miRNA:   3'- aCGCUCa---UGCgGA-GCgCAGAGCCGaa -5'
8961 3' -58.4 NC_002512.2 + 200842 0.68 0.764425
Target:  5'- aGCGGGgGCGCggCGCGUCUCuGCc- -3'
miRNA:   3'- aCGCUCaUGCGgaGCGCAGAGcCGaa -5'
8961 3' -58.4 NC_002512.2 + 214641 0.69 0.754291
Target:  5'- cGCGGGc-CGCCUCGCaGUCUcuccuccCGGCg- -3'
miRNA:   3'- aCGCUCauGCGGAGCG-CAGA-------GCCGaa -5'
8961 3' -58.4 NC_002512.2 + 155630 0.69 0.745908
Target:  5'- gUGCGAGgagagccggcgGCGCUUCgGCGUC-CGGCc- -3'
miRNA:   3'- -ACGCUCa----------UGCGGAG-CGCAGaGCCGaa -5'
8961 3' -58.4 NC_002512.2 + 111099 0.69 0.745908
Target:  5'- aUGCGGGUGCGCacccgCGCGUaguccCUCuGCUUg -3'
miRNA:   3'- -ACGCUCAUGCGga---GCGCA-----GAGcCGAA- -5'
8961 3' -58.4 NC_002512.2 + 226776 0.69 0.736506
Target:  5'- gGCGAGgACGUCUCGgGcgacgccguggUCUCGGCc- -3'
miRNA:   3'- aCGCUCaUGCGGAGCgC-----------AGAGCCGaa -5'
8961 3' -58.4 NC_002512.2 + 77822 0.69 0.717455
Target:  5'- aGCGAGUACGUgCUCGaCGcCgggCGGCa- -3'
miRNA:   3'- aCGCUCAUGCG-GAGC-GCaGa--GCCGaa -5'
8961 3' -58.4 NC_002512.2 + 228047 0.69 0.707824
Target:  5'- gGCGAG-ACGCC-CGCGga-CGGCUg -3'
miRNA:   3'- aCGCUCaUGCGGaGCGCagaGCCGAa -5'
8961 3' -58.4 NC_002512.2 + 79606 0.69 0.707824
Target:  5'- cGCGGGcggcaGCGCCgggUCGCGguaCUCGGCg- -3'
miRNA:   3'- aCGCUCa----UGCGG---AGCGCa--GAGCCGaa -5'
8961 3' -58.4 NC_002512.2 + 182635 0.7 0.678603
Target:  5'- cGCGAucuucuccaGCGCCU-GCGUCUCGGCc- -3'
miRNA:   3'- aCGCUca-------UGCGGAgCGCAGAGCCGaa -5'
8961 3' -58.4 NC_002512.2 + 114421 0.7 0.667797
Target:  5'- cUGCGAGcucUGCGCCagccgguUCGCGUgaUCGGCg- -3'
miRNA:   3'- -ACGCUC---AUGCGG-------AGCGCAg-AGCCGaa -5'
8961 3' -58.4 NC_002512.2 + 116744 0.71 0.639178
Target:  5'- gGCGAGgccgGCGCCccgcgCGCGUCUCcgaggagaGGCa- -3'
miRNA:   3'- aCGCUCa---UGCGGa----GCGCAGAG--------CCGaa -5'
8961 3' -58.4 NC_002512.2 + 106677 0.74 0.466536
Target:  5'- aGCGucGGUACGCgUCGCGgugUUCGGCg- -3'
miRNA:   3'- aCGC--UCAUGCGgAGCGCa--GAGCCGaa -5'
8961 3' -58.4 NC_002512.2 + 123478 0.74 0.46294
Target:  5'- cGCGGuGUGCGUCUCGCGgguccagggggugCUCGGCc- -3'
miRNA:   3'- aCGCU-CAUGCGGAGCGCa------------GAGCCGaa -5'
8961 3' -58.4 NC_002512.2 + 211284 0.75 0.397571
Target:  5'- uUGCGAGUGCGCCgagUGCGgcaugCGGCg- -3'
miRNA:   3'- -ACGCUCAUGCGGa--GCGCaga--GCCGaa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.