Results 1 - 20 of 619 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8961 | 5' | -58.3 | NC_002512.2 | + | 210682 | 1.12 | 0.001918 |
Target: 5'- uCCAAGCGCAACGGCAAGGCGCCGCGGg -3' miRNA: 3'- -GGUUCGCGUUGCCGUUCCGCGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 27587 | 0.86 | 0.103782 |
Target: 5'- cCCAaaAGCGCGGCGGCAcGGCGCCcCGGu -3' miRNA: 3'- -GGU--UCGCGUUGCCGUuCCGCGGcGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 95971 | 0.84 | 0.129772 |
Target: 5'- cCCGgguuGGCGCAGCGGCGGucggcguccGGCGCCGCGa -3' miRNA: 3'- -GGU----UCGCGUUGCCGUU---------CCGCGGCGCc -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 150315 | 0.83 | 0.150314 |
Target: 5'- -gGAGCGagacCGGCGGCGAGGaCGCCGCGGc -3' miRNA: 3'- ggUUCGC----GUUGCCGUUCC-GCGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 169058 | 0.82 | 0.177984 |
Target: 5'- cUCGGGCGCGaggggcuccGCGGCGGcGGCGUCGCGGc -3' miRNA: 3'- -GGUUCGCGU---------UGCCGUU-CCGCGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 90623 | 0.8 | 0.230591 |
Target: 5'- cCCGcGCGCcgGGCGGCGcgacccGGCGCCGCGGc -3' miRNA: 3'- -GGUuCGCG--UUGCCGUu-----CCGCGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 113268 | 0.8 | 0.247057 |
Target: 5'- -gGGGgGCGGcCGGCGGGGCaGCCGCGGc -3' miRNA: 3'- ggUUCgCGUU-GCCGUUCCG-CGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 5529 | 0.8 | 0.247057 |
Target: 5'- aCCGAGgucucccgccCGCGAcccCGGCGcGGCGCCGCGGa -3' miRNA: 3'- -GGUUC----------GCGUU---GCCGUuCCGCGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 75070 | 0.8 | 0.241463 |
Target: 5'- aCCGGGCgGCGACGuCGAGGCGCCGUuucGGg -3' miRNA: 3'- -GGUUCG-CGUUGCcGUUCCGCGGCG---CC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 101420 | 0.79 | 0.270511 |
Target: 5'- uCCGAGgGCAcaGCGGCGGccGGCGgCGCGGc -3' miRNA: 3'- -GGUUCgCGU--UGCCGUU--CCGCgGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 227218 | 0.79 | 0.276648 |
Target: 5'- aCCAGGagGCGGCGGaccggGAGGCGCgGCGGa -3' miRNA: 3'- -GGUUCg-CGUUGCCg----UUCCGCGgCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 4537 | 0.79 | 0.289255 |
Target: 5'- -gAAGCgGCGACGGUGAGGCGgCGCGa -3' miRNA: 3'- ggUUCG-CGUUGCCGUUCCGCgGCGCc -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 12383 | 0.79 | 0.289255 |
Target: 5'- cCCGAGCucgccuucggGCGGCGGCGGcGGCGCCG-GGa -3' miRNA: 3'- -GGUUCG----------CGUUGCCGUU-CCGCGGCgCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 114012 | 0.78 | 0.295725 |
Target: 5'- gCCGucGGCcccGCAGCGGCAccGGGCGCgGUGGa -3' miRNA: 3'- -GGU--UCG---CGUUGCCGU--UCCGCGgCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 166448 | 0.78 | 0.322729 |
Target: 5'- uCCGGGgGCGACGGCGccgggcucgaGGGCGgggacggcgggaCCGCGGg -3' miRNA: 3'- -GGUUCgCGUUGCCGU----------UCCGC------------GGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 103452 | 0.78 | 0.322729 |
Target: 5'- uCCGAGCGCGgguccgaggacGCGGCucGGGUcucggcggcgGCCGCGGa -3' miRNA: 3'- -GGUUCGCGU-----------UGCCGu-UCCG----------CGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 211315 | 0.78 | 0.302308 |
Target: 5'- uCCGAGCGCAucgUGGCGguccgggcccGGGCGCUGgGGg -3' miRNA: 3'- -GGUUCGCGUu--GCCGU----------UCCGCGGCgCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 6342 | 0.78 | 0.295725 |
Target: 5'- aCCGGGCGCGG-GGCcGGcGgGCCGCGGg -3' miRNA: 3'- -GGUUCGCGUUgCCGuUC-CgCGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 32843 | 0.78 | 0.301644 |
Target: 5'- cCCAGGCuGCAggaggugACGGUgccguGGGUGCCGCGGu -3' miRNA: 3'- -GGUUCG-CGU-------UGCCGu----UCCGCGGCGCC- -5' |
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8961 | 5' | -58.3 | NC_002512.2 | + | 104864 | 0.78 | 0.322729 |
Target: 5'- aCCucGCGCAGCGGgc-GGCGCCGaCGGc -3' miRNA: 3'- -GGuuCGCGUUGCCguuCCGCGGC-GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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