miRNA display CGI


Results 1 - 20 of 619 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 229543 0.74 0.511158
Target:  5'- gCCGGGgaGCcg-GGCGGGGCGCCgGCGGa -3'
miRNA:   3'- -GGUUCg-CGuugCCGUUCCGCGG-CGCC- -5'
8961 5' -58.3 NC_002512.2 + 229478 0.73 0.558176
Target:  5'- gCGGGCGCGAggaGGCGagAGGCGgCGgGGg -3'
miRNA:   3'- gGUUCGCGUUg--CCGU--UCCGCgGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 228588 0.66 0.898735
Target:  5'- ---cGUGuCGGCGGC-AGGCGCCGgaccaGGu -3'
miRNA:   3'- gguuCGC-GUUGCCGuUCCGCGGCg----CC- -5'
8961 5' -58.3 NC_002512.2 + 228392 0.66 0.916173
Target:  5'- uCC-GGCGUGAUcuguccgggGGaCGGGGCGCUGgGGg -3'
miRNA:   3'- -GGuUCGCGUUG---------CC-GUUCCGCGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 228224 0.73 0.529787
Target:  5'- gCCGGGCGaGACGGCGggaaGGGCGaacgugccggaCGCGGg -3'
miRNA:   3'- -GGUUCGCgUUGCCGU----UCCGCg----------GCGCC- -5'
8961 5' -58.3 NC_002512.2 + 228116 0.71 0.683928
Target:  5'- gUCGGcCGCAACGucguGCuGGGCGCCGaCGGg -3'
miRNA:   3'- -GGUUcGCGUUGC----CGuUCCGCGGC-GCC- -5'
8961 5' -58.3 NC_002512.2 + 228031 0.7 0.731398
Target:  5'- -gGGGCGaccggaCGGCGGCGAGaCGCcCGCGGa -3'
miRNA:   3'- ggUUCGC------GUUGCCGUUCcGCG-GCGCC- -5'
8961 5' -58.3 NC_002512.2 + 227932 0.68 0.819538
Target:  5'- uCCGAcGC-CGGCGGaCGAGGCGggggagCGCGGg -3'
miRNA:   3'- -GGUU-CGcGUUGCC-GUUCCGCg-----GCGCC- -5'
8961 5' -58.3 NC_002512.2 + 227874 0.68 0.819538
Target:  5'- uCCuGGUGC--CGGCucAGGCGaCGCGGg -3'
miRNA:   3'- -GGuUCGCGuuGCCGu-UCCGCgGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 227692 0.74 0.483745
Target:  5'- aCCGAGaCGaCGACGGCGGcGGgGgCGCGGu -3'
miRNA:   3'- -GGUUC-GC-GUUGCCGUU-CCgCgGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 227671 0.67 0.886061
Target:  5'- aCgAAGCGCGGCuGGCGA--CGCUGCGc -3'
miRNA:   3'- -GgUUCGCGUUG-CCGUUccGCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 227622 0.73 0.538252
Target:  5'- gCGGGCgGCGGCGGCGAGGUcaggcgacggagcGCC-CGGg -3'
miRNA:   3'- gGUUCG-CGUUGCCGUUCCG-------------CGGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 227474 0.68 0.819538
Target:  5'- gCCGGGgGCGGcCGGCcgcGAGGagguaggagaCGCCGCGa -3'
miRNA:   3'- -GGUUCgCGUU-GCCG---UUCC----------GCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 227423 0.66 0.910573
Target:  5'- cUCucGCGCGcgGGCGcGG-GCCGCGGu -3'
miRNA:   3'- -GGuuCGCGUugCCGUuCCgCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 227218 0.79 0.276648
Target:  5'- aCCAGGagGCGGCGGaccggGAGGCGCgGCGGa -3'
miRNA:   3'- -GGUUCg-CGUUGCCg----UUCCGCGgCGCC- -5'
8961 5' -58.3 NC_002512.2 + 227186 0.68 0.802058
Target:  5'- gCCGGGgG-AGCGGC-AGGCGCucccgcgCGCGGn -3'
miRNA:   3'- -GGUUCgCgUUGCCGuUCCGCG-------GCGCC- -5'
8961 5' -58.3 NC_002512.2 + 227052 0.68 0.802905
Target:  5'- aCGGGCG-GACGGCc-GGaGCCGUGGg -3'
miRNA:   3'- gGUUCGCgUUGCCGuuCCgCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 226981 0.66 0.904759
Target:  5'- uUAGGgGCGGCgucuuagcagagGGUGAGGCGgCGCGa -3'
miRNA:   3'- gGUUCgCGUUG------------CCGUUCCGCgGCGCc -5'
8961 5' -58.3 NC_002512.2 + 226749 0.66 0.91943
Target:  5'- aCCGGGCuccggccggacgacGCGGagGGCGAGGacgucucgggcgaCGCCGUGGu -3'
miRNA:   3'- -GGUUCG--------------CGUUg-CCGUUCC-------------GCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 226690 0.75 0.465867
Target:  5'- gCCGGGCcgucgcccGCGGCGGCGucgagcgacGGGagGCCGCGGg -3'
miRNA:   3'- -GGUUCG--------CGUUGCCGU---------UCCg-CGGCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.