miRNA display CGI


Results 21 - 40 of 619 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 104864 0.78 0.322729
Target:  5'- aCCucGCGCAGCGGgc-GGCGCCGaCGGc -3'
miRNA:   3'- -GGuuCGCGUUGCCguuCCGCGGC-GCC- -5'
8961 5' -58.3 NC_002512.2 + 216780 0.77 0.336907
Target:  5'- aCCGAGCGCcaggcagaacACGGCGucguugacgauGGCGUCGCGGg -3'
miRNA:   3'- -GGUUCGCGu---------UGCCGUu----------CCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 28073 0.77 0.336907
Target:  5'- cCCGGGCGCGGCGGagacggcggaGAGGuCGCCGCc- -3'
miRNA:   3'- -GGUUCGCGUUGCCg---------UUCC-GCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 83850 0.77 0.343433
Target:  5'- gCAGGCGCucuugaagaaguaGACGGgGuAGGCGUCGCGGu -3'
miRNA:   3'- gGUUCGCG-------------UUGCCgU-UCCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 4562 0.77 0.343433
Target:  5'- aCCGacggcugcGGCGUcuggGGCGGCGGaggaggcGGCGCCGCGGg -3'
miRNA:   3'- -GGU--------UCGCG----UUGCCGUU-------CCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 217089 0.77 0.344164
Target:  5'- cCCGAGCauccGCAGgGGCAgcggGGGCGCCGCc- -3'
miRNA:   3'- -GGUUCG----CGUUgCCGU----UCCGCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 37717 0.77 0.344164
Target:  5'- gCAGGacggacaGCGAgGGCAGGG-GCCGCGGg -3'
miRNA:   3'- gGUUCg------CGUUgCCGUUCCgCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 90448 0.77 0.344164
Target:  5'- -gAAGgGCGGCGGCcGGGCcaGCUGCGGg -3'
miRNA:   3'- ggUUCgCGUUGCCGuUCCG--CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 164565 0.77 0.35079
Target:  5'- -aAAGgGUAGCGGCAAGGCGUacuccggggaggaCGCGGc -3'
miRNA:   3'- ggUUCgCGUUGCCGUUCCGCG-------------GCGCC- -5'
8961 5' -58.3 NC_002512.2 + 174480 0.77 0.359012
Target:  5'- aCCAccAGCgGCAcgcuCGGCGGGGCGCUGgGGu -3'
miRNA:   3'- -GGU--UCG-CGUu---GCCGUUCCGCGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 184632 0.77 0.373528
Target:  5'- cCCGccGGCGgcCGACGGCGaguccgcGGGCGCCGCGc -3'
miRNA:   3'- -GGU--UCGC--GUUGCCGU-------UCCGCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 128836 0.77 0.374303
Target:  5'- --cGGCGCAGCuGCAccgcucGGGCGCCGCGcGg -3'
miRNA:   3'- gguUCGCGUUGcCGU------UCCGCGGCGC-C- -5'
8961 5' -58.3 NC_002512.2 + 103336 0.77 0.374303
Target:  5'- aCCGAGCGUGGgGGCGucgacgaguccGGG-GCCGCGGu -3'
miRNA:   3'- -GGUUCGCGUUgCCGU-----------UCCgCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 126767 0.77 0.374303
Target:  5'- uCgGGGCGCGGCGGCGGcGGCGaCGCGu -3'
miRNA:   3'- -GgUUCGCGUUGCCGUU-CCGCgGCGCc -5'
8961 5' -58.3 NC_002512.2 + 79341 0.77 0.374303
Target:  5'- cCCAGGuCGCGGCGGCGuacccucgcGGcCGCCGCGu -3'
miRNA:   3'- -GGUUC-GCGUUGCCGUu--------CC-GCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 185191 0.76 0.390029
Target:  5'- uCCGAGaaCGCGGCGGCGGucGaCGCCGCGGu -3'
miRNA:   3'- -GGUUC--GCGUUGCCGUU--CcGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 211759 0.76 0.395634
Target:  5'- cCCGGGCGCuGCGGgAggacguggaggcccGGGUgGCCGCGGg -3'
miRNA:   3'- -GGUUCGCGuUGCCgU--------------UCCG-CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 158919 0.76 0.398052
Target:  5'- gCCGAGUacgGCuuCGGCgGGGGCGCCgGCGGc -3'
miRNA:   3'- -GGUUCG---CGuuGCCG-UUCCGCGG-CGCC- -5'
8961 5' -58.3 NC_002512.2 + 73325 0.76 0.398052
Target:  5'- aCCGAGCGCAGCaGGCucucccGCGUCGCGu -3'
miRNA:   3'- -GGUUCGCGUUG-CCGuuc---CGCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 123577 0.76 0.40618
Target:  5'- gCCGaaGGCGCuGCGGgucugaGAGGaCGCCGCGGc -3'
miRNA:   3'- -GGU--UCGCGuUGCCg-----UUCC-GCGGCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.