miRNA display CGI


Results 21 - 40 of 619 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 5529 0.8 0.247057
Target:  5'- aCCGAGgucucccgccCGCGAcccCGGCGcGGCGCCGCGGa -3'
miRNA:   3'- -GGUUC----------GCGUU---GCCGUuCCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 5874 0.74 0.505622
Target:  5'- cCCGGGCGUcguccGacucgucgcucguggACGGCGGGGCGC-GCGGg -3'
miRNA:   3'- -GGUUCGCG-----U---------------UGCCGUUCCGCGgCGCC- -5'
8961 5' -58.3 NC_002512.2 + 6342 0.78 0.295725
Target:  5'- aCCGGGCGCGG-GGCcGGcGgGCCGCGGg -3'
miRNA:   3'- -GGUUCGCGUUgCCGuUC-CgCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 6400 0.71 0.69353
Target:  5'- aCGGGCagggagGCGGCGGC--GGCGCUGgGGa -3'
miRNA:   3'- gGUUCG------CGUUGCCGuuCCGCGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 6937 0.67 0.863394
Target:  5'- aCGA-CGCAGCGGUAgAGGCcggccaggucguugGCcCGCGGg -3'
miRNA:   3'- gGUUcGCGUUGCCGU-UCCG--------------CG-GCGCC- -5'
8961 5' -58.3 NC_002512.2 + 7207 0.72 0.616044
Target:  5'- gCCGGGCGCAGuCGaacuCGAGGCGCCccuCGGc -3'
miRNA:   3'- -GGUUCGCGUU-GCc---GUUCCGCGGc--GCC- -5'
8961 5' -58.3 NC_002512.2 + 7244 0.66 0.904759
Target:  5'- gCCGGcCGUcGCGGCGGagcGGCGuCCGuCGGg -3'
miRNA:   3'- -GGUUcGCGuUGCCGUU---CCGC-GGC-GCC- -5'
8961 5' -58.3 NC_002512.2 + 7303 0.75 0.430332
Target:  5'- aCAGGCcuccuccGCGACGGCGGGcCGCgGCGGg -3'
miRNA:   3'- gGUUCG-------CGUUGCCGUUCcGCGgCGCC- -5'
8961 5' -58.3 NC_002512.2 + 7361 0.69 0.749898
Target:  5'- cCCAc-CGCGACGGC--GGcCGCgGCGGg -3'
miRNA:   3'- -GGUucGCGUUGCCGuuCC-GCGgCGCC- -5'
8961 5' -58.3 NC_002512.2 + 7433 0.7 0.722028
Target:  5'- gCC-GGCGCGagguuggccGCGGCccGGGGgaaGCCGCGGc -3'
miRNA:   3'- -GGuUCGCGU---------UGCCG--UUCCg--CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 7973 0.67 0.850907
Target:  5'- aCCAGGC-CAuCGGCGcuGGCGCC-CGa -3'
miRNA:   3'- -GGUUCGcGUuGCCGUu-CCGCGGcGCc -5'
8961 5' -58.3 NC_002512.2 + 8033 0.67 0.858317
Target:  5'- uCCGAGagGUccCGGUcccGAGGCGCCcccGCGGg -3'
miRNA:   3'- -GGUUCg-CGuuGCCG---UUCCGCGG---CGCC- -5'
8961 5' -58.3 NC_002512.2 + 8196 0.68 0.802905
Target:  5'- gCCGAGCGUcGCcgGGC-GGGUGuCCGCGu -3'
miRNA:   3'- -GGUUCGCGuUG--CCGuUCCGC-GGCGCc -5'
8961 5' -58.3 NC_002512.2 + 8238 0.67 0.871883
Target:  5'- cUCGAGCGUcGCGccguagaGCAGGGCcGCCG-GGu -3'
miRNA:   3'- -GGUUCGCGuUGC-------CGUUCCG-CGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 8349 0.72 0.606336
Target:  5'- uCC-GGCGUAGCGGUAGGcgggaGCGCCGaGGa -3'
miRNA:   3'- -GGuUCGCGUUGCCGUUC-----CGCGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 8409 0.66 0.898734
Target:  5'- gCCGAGCGCcaggAACGcGCAccGCGgCCGguCGGa -3'
miRNA:   3'- -GGUUCGCG----UUGC-CGUucCGC-GGC--GCC- -5'
8961 5' -58.3 NC_002512.2 + 8534 0.68 0.827627
Target:  5'- aCCGAcaCGgAGCGGCGAGGC--CGCGGu -3'
miRNA:   3'- -GGUUc-GCgUUGCCGUUCCGcgGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 10097 0.66 0.892501
Target:  5'- cCCuaucuGUGUcccCGGCcGGGCcgGCCGCGGg -3'
miRNA:   3'- -GGuu---CGCGuu-GCCGuUCCG--CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 10478 0.69 0.785714
Target:  5'- cCCGGGCGUGggcgucGCGGCGGGcCGaCCaGCGGa -3'
miRNA:   3'- -GGUUCGCGU------UGCCGUUCcGC-GG-CGCC- -5'
8961 5' -58.3 NC_002512.2 + 10530 0.68 0.81872
Target:  5'- -gAGGCGCAggaccucGCGGaCGccGGGCaGCCgGCGGg -3'
miRNA:   3'- ggUUCGCGU-------UGCC-GU--UCCG-CGG-CGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.