miRNA display CGI


Results 41 - 60 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 227423 0.66 0.910573
Target:  5'- cUCucGCGCGcgGGCGcGG-GCCGCGGu -3'
miRNA:   3'- -GGuuCGCGUugCCGUuCCgCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 30655 0.66 0.910573
Target:  5'- aUCGGGCuGCGcCGGaucuaccGGGCGgCGCGGu -3'
miRNA:   3'- -GGUUCG-CGUuGCCgu-----UCCGCgGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 135567 0.66 0.910573
Target:  5'- gUCGAGCGUuucGCGcCGGGGCGCaacCGGg -3'
miRNA:   3'- -GGUUCGCGu--UGCcGUUCCGCGgc-GCC- -5'
8961 5' -58.3 NC_002512.2 + 207873 0.66 0.910573
Target:  5'- gCGAGUccgGgGACGGCuucuGGCGCUcucgGCGGu -3'
miRNA:   3'- gGUUCG---CgUUGCCGuu--CCGCGG----CGCC- -5'
8961 5' -58.3 NC_002512.2 + 205017 0.66 0.910573
Target:  5'- aCGAcGCGCcuCGGUcGGG-GCCGCGu -3'
miRNA:   3'- gGUU-CGCGuuGCCGuUCCgCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 170369 0.66 0.910573
Target:  5'- gCCAGG-GC--CGuGCGcGGCGCCGCGc -3'
miRNA:   3'- -GGUUCgCGuuGC-CGUuCCGCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 215755 0.66 0.910573
Target:  5'- cCCAAGgGCuguuucuccAGCGGCA--GCGCCGUc- -3'
miRNA:   3'- -GGUUCgCG---------UUGCCGUucCGCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 118882 0.66 0.910573
Target:  5'- gCCGGGUGUAcACGGUgAAGaacacggggcccGCGCUGUGGg -3'
miRNA:   3'- -GGUUCGCGU-UGCCG-UUC------------CGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 111911 0.66 0.910573
Target:  5'- cCCGAGCaGC-ACGGCcAGGCGgggaGCGu -3'
miRNA:   3'- -GGUUCG-CGuUGCCGuUCCGCgg--CGCc -5'
8961 5' -58.3 NC_002512.2 + 181678 0.66 0.910573
Target:  5'- ---cGCGCcccGCGGCcGGGaucCCGCGGg -3'
miRNA:   3'- gguuCGCGu--UGCCGuUCCgc-GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 11843 0.66 0.910573
Target:  5'- aCGAcGCgGCGACGGgGAGG-GaCGCGGa -3'
miRNA:   3'- gGUU-CG-CGUUGCCgUUCCgCgGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 105049 0.66 0.910573
Target:  5'- gCGGGCcucgcucgGCGACGGCGGcGUGUCGgGGu -3'
miRNA:   3'- gGUUCG--------CGUUGCCGUUcCGCGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 22204 0.66 0.910573
Target:  5'- aCgGAGCGCuuCGGCcggcGGGagaGCC-CGGg -3'
miRNA:   3'- -GgUUCGCGuuGCCGu---UCCg--CGGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 137087 0.66 0.910573
Target:  5'- aCAGGCccGCggUGuGCGcccAGGCGC-GCGGg -3'
miRNA:   3'- gGUUCG--CGuuGC-CGU---UCCGCGgCGCC- -5'
8961 5' -58.3 NC_002512.2 + 87695 0.66 0.910573
Target:  5'- aCGGGaCGC-GCGGCGAcgcGGagaCGCCGCGa -3'
miRNA:   3'- gGUUC-GCGuUGCCGUU---CC---GCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 211686 0.66 0.910001
Target:  5'- aCCGuGCGCGacgugauGCGGCAcgaggAGcGCGCCuaCGGg -3'
miRNA:   3'- -GGUuCGCGU-------UGCCGU-----UC-CGCGGc-GCC- -5'
8961 5' -58.3 NC_002512.2 + 15666 0.66 0.910001
Target:  5'- aCGAGcCGCcuGACgucccggGGCAgcGGGCGCaGCGGg -3'
miRNA:   3'- gGUUC-GCG--UUG-------CCGU--UCCGCGgCGCC- -5'
8961 5' -58.3 NC_002512.2 + 137221 0.66 0.908273
Target:  5'- gCCcGGCGCgGGCGGCcgucccgGAuccgcgcgggucccGGCGCCgGCGGc -3'
miRNA:   3'- -GGuUCGCG-UUGCCG-------UU--------------CCGCGG-CGCC- -5'
8961 5' -58.3 NC_002512.2 + 147446 0.66 0.908273
Target:  5'- ---uGCGCAGaCGGCggccgucugucgcuGcuggucuucgcgcGGGCGCUGCGGa -3'
miRNA:   3'- gguuCGCGUU-GCCG--------------U-------------UCCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 191487 0.66 0.90711
Target:  5'- gCCGgacAGCGCGGCgaccGGCGcgcucccuuccuacgAGGagGCCGUGGg -3'
miRNA:   3'- -GGU---UCGCGUUG----CCGU---------------UCCg-CGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.