Results 41 - 60 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8962 | 3' | -59.6 | NC_002512.2 | + | 104773 | 0.69 | 0.696442 |
Target: 5'- -cCCGGU-CGGACGGCgCGUggcggggucCGCGCg- -3' miRNA: 3'- aaGGCCAuGCCUGUCG-GCA---------GCGCGag -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 119021 | 0.69 | 0.696442 |
Target: 5'- cUCCuGGUggACGGGcCGGCCGUCGUGggCc -3' miRNA: 3'- aAGG-CCA--UGCCU-GUCGGCAGCGCgaG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 83969 | 0.69 | 0.686794 |
Target: 5'- -cCCGGcgGCGGAUgcccggcgcggGGCgGUCGCGCa- -3' miRNA: 3'- aaGGCCa-UGCCUG-----------UCGgCAGCGCGag -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 170115 | 0.69 | 0.686794 |
Target: 5'- -gCCGGUugGGAUAgGCCGUaggggucgUGUGCUg -3' miRNA: 3'- aaGGCCAugCCUGU-CGGCA--------GCGCGAg -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 111924 | 0.69 | 0.657628 |
Target: 5'- gUUCgGGUGcCGGaACAGCUccagGUCGgCGCUCa -3' miRNA: 3'- -AAGgCCAU-GCC-UGUCGG----CAGC-GCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 19366 | 0.69 | 0.657628 |
Target: 5'- gUCgGGggcuCGG-CGGCC-UCGCGCUCg -3' miRNA: 3'- aAGgCCau--GCCuGUCGGcAGCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 221678 | 0.66 | 0.830805 |
Target: 5'- gUCUGGgacGCGGACAcCCGcccggCGaCGCUCg -3' miRNA: 3'- aAGGCCa--UGCCUGUcGGCa----GC-GCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 124959 | 0.66 | 0.830805 |
Target: 5'- -gCCGG-ACGaGGaGGCCGUCGCGgaCu -3' miRNA: 3'- aaGGCCaUGC-CUgUCGGCAGCGCgaG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 191473 | 0.66 | 0.830805 |
Target: 5'- -gCCGaGUAcgaggcgcCGGACAGCgCGgcgaccggCGCGCUCc -3' miRNA: 3'- aaGGC-CAU--------GCCUGUCG-GCa-------GCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 26456 | 0.66 | 0.822728 |
Target: 5'- uUUCUGccaauUACGGACAgcgucaccucuGCCGuUCGUGCUCg -3' miRNA: 3'- -AAGGCc----AUGCCUGU-----------CGGC-AGCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 174360 | 0.66 | 0.814492 |
Target: 5'- -gCCGGgaUGCGGAUGGCCGagaaCGgGUUCu -3' miRNA: 3'- aaGGCC--AUGCCUGUCGGCa---GCgCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 217541 | 0.67 | 0.806105 |
Target: 5'- -cCUGGUugaacCGGGCGuuGuuGUCGCGUUCg -3' miRNA: 3'- aaGGCCAu----GCCUGU--CggCAGCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 88708 | 0.66 | 0.838717 |
Target: 5'- aUCCGGUaGCGGGCcaGGaagaCGUCGCGg-- -3' miRNA: 3'- aAGGCCA-UGCCUG--UCg---GCAGCGCgag -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 214223 | 0.66 | 0.838717 |
Target: 5'- -cCCGGgACGucaGGCGGCuCGUCG-GCUCg -3' miRNA: 3'- aaGGCCaUGC---CUGUCG-GCAGCgCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 77781 | 0.66 | 0.841834 |
Target: 5'- cUCCGGgucggGCGGACGGUuccuucgagugCGUguccgauagcgaguaCGUGCUCg -3' miRNA: 3'- aAGGCCa----UGCCUGUCG-----------GCA---------------GCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 156147 | 0.66 | 0.846457 |
Target: 5'- --aCGGcUACGGuagccagaAGCUGUCGCuGCUCg -3' miRNA: 3'- aagGCC-AUGCCug------UCGGCAGCG-CGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 103347 | 0.66 | 0.846457 |
Target: 5'- -cCCGGgGCGGACGGCacgGUCGaGgUCa -3' miRNA: 3'- aaGGCCaUGCCUGUCGg--CAGCgCgAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 215217 | 0.66 | 0.846457 |
Target: 5'- --gCGGgGCGGACAacGCCGUCuaccUGCUCg -3' miRNA: 3'- aagGCCaUGCCUGU--CGGCAGc---GCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 126399 | 0.66 | 0.85402 |
Target: 5'- -cCCGGggcccCGGGC-GCCGUCGaCGC-Cg -3' miRNA: 3'- aaGGCCau---GCCUGuCGGCAGC-GCGaG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 209746 | 1.06 | 0.003422 |
Target: 5'- cUUCCGGUACGGACAGCCGUCGCGCUCc -3' miRNA: 3'- -AAGGCCAUGCCUGUCGGCAGCGCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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