miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8962 3' -59.6 NC_002512.2 + 125972 0.68 0.741933
Target:  5'- -cCCGGUACuGGACgcagaagcgcuucagGGCCGUgaaggucucguugcaCGCGUUCg -3'
miRNA:   3'- aaGGCCAUG-CCUG---------------UCGGCA---------------GCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 184385 0.68 0.734467
Target:  5'- gUCCugauGGUACcGACGaugcuGCCGUCGUGUUCg -3'
miRNA:   3'- aAGG----CCAUGcCUGU-----CGGCAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 36446 0.68 0.734467
Target:  5'- -cCCGccACcGGCGGCCGcggUCGCGCUCg -3'
miRNA:   3'- aaGGCcaUGcCUGUCGGC---AGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 128227 0.68 0.725063
Target:  5'- -aUCGGccCGGcguccGCGGCCGcCGCGCUCc -3'
miRNA:   3'- aaGGCCauGCC-----UGUCGGCaGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 81368 0.68 0.715585
Target:  5'- -gCCGGgGCGGGCGGCgGcCGC-CUCc -3'
miRNA:   3'- aaGGCCaUGCCUGUCGgCaGCGcGAG- -5'
8962 3' -59.6 NC_002512.2 + 84540 0.68 0.715585
Target:  5'- -gCCGGcguCGGGCGGCgcggCGagGCGCUCg -3'
miRNA:   3'- aaGGCCau-GCCUGUCG----GCagCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 107007 0.68 0.706042
Target:  5'- -gCCGGggucgGCcGAgAGCCGggCGCGCUCc -3'
miRNA:   3'- aaGGCCa----UGcCUgUCGGCa-GCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 3679 0.69 0.696442
Target:  5'- -cCCGGUGauGGCccGGCCG-CGCGCUa -3'
miRNA:   3'- aaGGCCAUgcCUG--UCGGCaGCGCGAg -5'
8962 3' -59.6 NC_002512.2 + 127648 0.69 0.696442
Target:  5'- aUCgGGUcgcuCGGACGGCCGgUCGagggcCGCUCc -3'
miRNA:   3'- aAGgCCAu---GCCUGUCGGC-AGC-----GCGAG- -5'
8962 3' -59.6 NC_002512.2 + 119021 0.69 0.696442
Target:  5'- cUCCuGGUggACGGGcCGGCCGUCGUGggCc -3'
miRNA:   3'- aAGG-CCA--UGCCU-GUCGGCAGCGCgaG- -5'
8962 3' -59.6 NC_002512.2 + 104773 0.69 0.696442
Target:  5'- -cCCGGU-CGGACGGCgCGUggcggggucCGCGCg- -3'
miRNA:   3'- aaGGCCAuGCCUGUCG-GCA---------GCGCGag -5'
8962 3' -59.6 NC_002512.2 + 119101 0.69 0.696442
Target:  5'- ---aGGUGCGGGCGGCC-UCgGCGCa- -3'
miRNA:   3'- aaggCCAUGCCUGUCGGcAG-CGCGag -5'
8962 3' -59.6 NC_002512.2 + 204727 0.69 0.686794
Target:  5'- -cCCGGgGCGGGgGGCCGgacccggGUGCUCa -3'
miRNA:   3'- aaGGCCaUGCCUgUCGGCag-----CGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 170115 0.69 0.686794
Target:  5'- -gCCGGUugGGAUAgGCCGUaggggucgUGUGCUg -3'
miRNA:   3'- aaGGCCAugCCUGU-CGGCA--------GCGCGAg -5'
8962 3' -59.6 NC_002512.2 + 83969 0.69 0.686794
Target:  5'- -cCCGGcgGCGGAUgcccggcgcggGGCgGUCGCGCa- -3'
miRNA:   3'- aaGGCCa-UGCCUG-----------UCGgCAGCGCGag -5'
8962 3' -59.6 NC_002512.2 + 210829 0.69 0.677103
Target:  5'- cUCCGGUG-GGACacGGCCGUCuggggGCuGCUCc -3'
miRNA:   3'- aAGGCCAUgCCUG--UCGGCAG-----CG-CGAG- -5'
8962 3' -59.6 NC_002512.2 + 183893 0.69 0.677103
Target:  5'- uUUCCGGuUACGGACAGUCGaacggcUGC-CUCg -3'
miRNA:   3'- -AAGGCC-AUGCCUGUCGGCa-----GCGcGAG- -5'
8962 3' -59.6 NC_002512.2 + 189045 0.69 0.676132
Target:  5'- gUUCGGUAauguccuCGGAgCGGCCGgcgGCGCUCu -3'
miRNA:   3'- aAGGCCAU-------GCCU-GUCGGCag-CGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 111924 0.69 0.657628
Target:  5'- gUUCgGGUGcCGGaACAGCUccagGUCGgCGCUCa -3'
miRNA:   3'- -AAGgCCAU-GCC-UGUCGG----CAGC-GCGAG- -5'
8962 3' -59.6 NC_002512.2 + 19366 0.69 0.657628
Target:  5'- gUCgGGggcuCGG-CGGCC-UCGCGCUCg -3'
miRNA:   3'- aAGgCCau--GCCuGUCGGcAGCGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.