miRNA display CGI


Results 41 - 60 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8962 5' -55.7 NC_002512.2 + 188800 0.69 0.869281
Target:  5'- gGC-GGCCCcgaucgcGGCGGCUACUUCAa---- -3'
miRNA:   3'- -CGuUCGGG-------CCGCCGAUGAAGUaccag -5'
8962 5' -55.7 NC_002512.2 + 169549 0.69 0.862653
Target:  5'- gGCu-GCCCGGCGGCguggcCUUCGccgGcGUCu -3'
miRNA:   3'- -CGuuCGGGCCGCCGau---GAAGUa--C-CAG- -5'
8962 5' -55.7 NC_002512.2 + 103340 0.69 0.862653
Target:  5'- gGCGuAGCCCGG-GGCggACggCAcGGUCg -3'
miRNA:   3'- -CGU-UCGGGCCgCCGa-UGaaGUaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 111103 0.69 0.855099
Target:  5'- aGCucccGCCCGGCGGCggagGCgccgcccgCggGGUCc -3'
miRNA:   3'- -CGuu--CGGGCCGCCGa---UGaa------GuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 151027 0.69 0.84735
Target:  5'- cGCGAGCCaccucgaGGCGGCgGCccgUCAcgcGGUCc -3'
miRNA:   3'- -CGUUCGGg------CCGCCGaUGa--AGUa--CCAG- -5'
8962 5' -55.7 NC_002512.2 + 59833 0.69 0.862653
Target:  5'- gGC-GGCCgCGGCGGCgGCggcCAUGGcCa -3'
miRNA:   3'- -CGuUCGG-GCCGCCGaUGaa-GUACCaG- -5'
8962 5' -55.7 NC_002512.2 + 91720 0.69 0.862653
Target:  5'- cGC-AGCCCGGCGGgUGCggaCAguucGUCa -3'
miRNA:   3'- -CGuUCGGGCCGCCgAUGaa-GUac--CAG- -5'
8962 5' -55.7 NC_002512.2 + 123056 0.7 0.822997
Target:  5'- uGCAcccuGGCCCGGCuGCUgugggaggGCUUCA-GGUUc -3'
miRNA:   3'- -CGU----UCGGGCCGcCGA--------UGAAGUaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 42609 0.7 0.797138
Target:  5'- -gAAGCCCGGgGGC-ACUUCGaGG-Cg -3'
miRNA:   3'- cgUUCGGGCCgCCGaUGAAGUaCCaG- -5'
8962 5' -55.7 NC_002512.2 + 126359 0.7 0.78822
Target:  5'- ---cGgCCGGCGGCaACUUCcugcUGGUCa -3'
miRNA:   3'- cguuCgGGCCGCCGaUGAAGu---ACCAG- -5'
8962 5' -55.7 NC_002512.2 + 209868 0.7 0.822997
Target:  5'- uGCGGGa-CGcCGGCUACUaCGUGGUCg -3'
miRNA:   3'- -CGUUCggGCcGCCGAUGAaGUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 208250 0.7 0.822997
Target:  5'- -aAGGCCCGGUccugggaacGCUACaccacgUUCAUGGUCa -3'
miRNA:   3'- cgUUCGGGCCGc--------CGAUG------AAGUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 128407 0.7 0.822997
Target:  5'- uCGAGCCCGGUGGCgg------GGUCg -3'
miRNA:   3'- cGUUCGGGCCGCCGaugaaguaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 157144 0.7 0.797138
Target:  5'- gGCGGGCCCggggcgGGCGGCgggccggGCggCGUGGg- -3'
miRNA:   3'- -CGUUCGGG------CCGCCGa------UGaaGUACCag -5'
8962 5' -55.7 NC_002512.2 + 118792 0.71 0.751275
Target:  5'- ---cGCCgGGCGGgaGCUgugggcccccgUCGUGGUCg -3'
miRNA:   3'- cguuCGGgCCGCCgaUGA-----------AGUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 81248 0.71 0.73216
Target:  5'- -gGAGUCCGGCGGCcUGCggUUGaGGUCg -3'
miRNA:   3'- cgUUCGGGCCGCCG-AUGa-AGUaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 7321 0.71 0.73216
Target:  5'- gGCGGGCCgCGGCGGg-ACggUcgGGUCg -3'
miRNA:   3'- -CGUUCGG-GCCGCCgaUGaaGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 196178 0.71 0.751275
Target:  5'- gGCGAGCCCgaGGgGGCgACggCcgGGUCc -3'
miRNA:   3'- -CGUUCGGG--CCgCCGaUGaaGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 200720 0.72 0.722472
Target:  5'- gGCugccGCCCGGCGGUccgaacgggucgUACcgggCGUGGUCg -3'
miRNA:   3'- -CGuu--CGGGCCGCCG------------AUGaa--GUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 83103 0.72 0.71271
Target:  5'- cCGGGUCCGGCGGUccgGCgUCGgucgGGUCg -3'
miRNA:   3'- cGUUCGGGCCGCCGa--UGaAGUa---CCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.