miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8962 5' -55.7 NC_002512.2 + 151027 0.69 0.84735
Target:  5'- cGCGAGCCaccucgaGGCGGCgGCccgUCAcgcGGUCc -3'
miRNA:   3'- -CGUUCGGg------CCGCCGaUGa--AGUa--CCAG- -5'
8962 5' -55.7 NC_002512.2 + 153271 0.69 0.870007
Target:  5'- gGCGGGuCCUGGuCGGCUgGCUccgcugggucggUCcgGGUCg -3'
miRNA:   3'- -CGUUC-GGGCC-GCCGA-UGA------------AGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 155631 0.66 0.961127
Target:  5'- uGCGAGgagagCCGGCGGC-GCUUCGgcGUCc -3'
miRNA:   3'- -CGUUCg----GGCCGCCGaUGAAGUacCAG- -5'
8962 5' -55.7 NC_002512.2 + 156261 0.77 0.458105
Target:  5'- aCGAGCCCGGCGGCgccuucgACUUCuccgaGUGGcCc -3'
miRNA:   3'- cGUUCGGGCCGCCGa------UGAAG-----UACCaG- -5'
8962 5' -55.7 NC_002512.2 + 157144 0.7 0.797138
Target:  5'- gGCGGGCCCggggcgGGCGGCgggccggGCggCGUGGg- -3'
miRNA:   3'- -CGUUCGGG------CCGCCGa------UGaaGUACCag -5'
8962 5' -55.7 NC_002512.2 + 165390 0.68 0.903591
Target:  5'- cGCAAGgUCGG-GGC-GC-UCAUGGUCc -3'
miRNA:   3'- -CGUUCgGGCCgCCGaUGaAGUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 167567 0.68 0.890811
Target:  5'- ---uGCCCGuCGGCUuCUUCccGGUCa -3'
miRNA:   3'- cguuCGGGCcGCCGAuGAAGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 169549 0.69 0.862653
Target:  5'- gGCu-GCCCGGCGGCguggcCUUCGccgGcGUCu -3'
miRNA:   3'- -CGuuCGGGCCGCCGau---GAAGUa--C-CAG- -5'
8962 5' -55.7 NC_002512.2 + 175806 0.68 0.903591
Target:  5'- gGCGGcGuCCCGGCGGCUccGCUcgucCGUGG-Cg -3'
miRNA:   3'- -CGUU-C-GGGCCGCCGA--UGAa---GUACCaG- -5'
8962 5' -55.7 NC_002512.2 + 177328 0.68 0.903591
Target:  5'- uGUcGGCCCGGUauaGUUugUUCAgGGUCa -3'
miRNA:   3'- -CGuUCGGGCCGc--CGAugAAGUaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 180566 0.68 0.88409
Target:  5'- gGCGGGCuCCGGUGGCU-CUcuaUCAgGGcCg -3'
miRNA:   3'- -CGUUCG-GGCCGCCGAuGA---AGUaCCaG- -5'
8962 5' -55.7 NC_002512.2 + 182223 0.67 0.926427
Target:  5'- aGCAcGUUCGGCGGCgccacgUGCUUCAgcagGGa- -3'
miRNA:   3'- -CGUuCGGGCCGCCG------AUGAAGUa---CCag -5'
8962 5' -55.7 NC_002512.2 + 188561 0.74 0.57284
Target:  5'- gGC-AGCuCCGGCGGCgacgACUUCucGGUCu -3'
miRNA:   3'- -CGuUCG-GGCCGCCGa---UGAAGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 188641 0.68 0.909643
Target:  5'- cGCAagGGCgCCGGCGGCggcgGCggcccgUCGUccgaccgcggcGGUCu -3'
miRNA:   3'- -CGU--UCG-GGCCGCCGa---UGa-----AGUA-----------CCAG- -5'
8962 5' -55.7 NC_002512.2 + 188800 0.69 0.869281
Target:  5'- gGC-GGCCCcgaucgcGGCGGCUACUUCAa---- -3'
miRNA:   3'- -CGuUCGGG-------CCGCCGAUGAAGUaccag -5'
8962 5' -55.7 NC_002512.2 + 188926 0.66 0.961127
Target:  5'- -aGAGuCCCGGUGGCgggGCgcggcGGUCg -3'
miRNA:   3'- cgUUC-GGGCCGCCGa--UGaaguaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 194327 0.67 0.931561
Target:  5'- --uGGCCCGGgaCGGUUGC---GUGGUCg -3'
miRNA:   3'- cguUCGGGCC--GCCGAUGaagUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 196178 0.71 0.751275
Target:  5'- gGCGAGCCCgaGGgGGCgACggCcgGGUCc -3'
miRNA:   3'- -CGUUCGGG--CCgCCGaUGaaGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 196398 0.66 0.95646
Target:  5'- cGCGGGUCUGGCgcggggacgcggggGGCgGCggCcgGGUCg -3'
miRNA:   3'- -CGUUCGGGCCG--------------CCGaUGaaGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 200720 0.72 0.722472
Target:  5'- gGCugccGCCCGGCGGUccgaacgggucgUACcgggCGUGGUCg -3'
miRNA:   3'- -CGuu--CGGGCCGCCG------------AUGaa--GUACCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.