miRNA display CGI


Results 41 - 60 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 3' -59.9 NC_002512.2 + 218482 0.74 0.449749
Target:  5'- uCUCCUCGUCCcGCG-GGUCGuCCGCg -3'
miRNA:   3'- cGAGGAGCAGGcCGUgCCAGU-GGCGg -5'
8963 3' -59.9 NC_002512.2 + 189461 0.74 0.449749
Target:  5'- aGCUCUUCGUCgcgcgcgagauCGGCuacacccugGCcGUCACCGCCa -3'
miRNA:   3'- -CGAGGAGCAG-----------GCCG---------UGcCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 163008 0.74 0.449749
Target:  5'- cGUUCCUCGagCGGCccgaGGUCACCaucGCCu -3'
miRNA:   3'- -CGAGGAGCagGCCGug--CCAGUGG---CGG- -5'
8963 3' -59.9 NC_002512.2 + 224384 0.74 0.449749
Target:  5'- gGgaCCUCGcgaccCCGGCGCGGaCGCgCGCCa -3'
miRNA:   3'- -CgaGGAGCa----GGCCGUGCCaGUG-GCGG- -5'
8963 3' -59.9 NC_002512.2 + 47627 0.74 0.458334
Target:  5'- aGUUCCcCGUCCuGGCGCcGUCGCUGUCc -3'
miRNA:   3'- -CGAGGaGCAGG-CCGUGcCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 108520 0.74 0.461793
Target:  5'- cCUCCUC-UCCGGCccucuccgccguccaACGGcccCGCCGCCg -3'
miRNA:   3'- cGAGGAGcAGGCCG---------------UGCCa--GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 75556 0.73 0.475762
Target:  5'- cGCgggCUCG-CCGGgGCGGggcCGCCGCCg -3'
miRNA:   3'- -CGag-GAGCaGGCCgUGCCa--GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 103231 0.73 0.475762
Target:  5'- uGCUCCUCuuGUCCGGgGacaGGg-ACCGCCu -3'
miRNA:   3'- -CGAGGAG--CAGGCCgUg--CCagUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 14809 0.73 0.484598
Target:  5'- -gUCCUCGgucccgCCGaCGCGGUagaCGCCGCCg -3'
miRNA:   3'- cgAGGAGCa-----GGCcGUGCCA---GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 49837 0.73 0.484598
Target:  5'- ----gUCGUCCGGCACccgCACCGCCu -3'
miRNA:   3'- cgaggAGCAGGCCGUGccaGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 112874 0.73 0.492618
Target:  5'- cGCgUCCUCcgGcCCGGCGuucucguCGGUCGCCGCg -3'
miRNA:   3'- -CG-AGGAG--CaGGCCGU-------GCCAGUGGCGg -5'
8963 3' -59.9 NC_002512.2 + 157591 0.73 0.502502
Target:  5'- uUUCaggugaUCG-CCGGCGCGuUCGCCGCCa -3'
miRNA:   3'- cGAGg-----AGCaGGCCGUGCcAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 102895 0.73 0.502502
Target:  5'- aCUCCaccgugCGcCUGGCGCGGUCgACgGCCa -3'
miRNA:   3'- cGAGGa-----GCaGGCCGUGCCAG-UGgCGG- -5'
8963 3' -59.9 NC_002512.2 + 182592 0.73 0.508836
Target:  5'- aGCUCCgcgaUCGcCCGGCAguuccgcagcggcuCGGUgGCCGCg -3'
miRNA:   3'- -CGAGG----AGCaGGCCGU--------------GCCAgUGGCGg -5'
8963 3' -59.9 NC_002512.2 + 103095 0.73 0.511561
Target:  5'- -aUCC-CGgggacgggCgCGGCACGcGUCGCCGCCg -3'
miRNA:   3'- cgAGGaGCa-------G-GCCGUGC-CAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 177941 0.72 0.520688
Target:  5'- gGCUCCgCGUCCGacaGCugGGUgAucagucCCGCCa -3'
miRNA:   3'- -CGAGGaGCAGGC---CGugCCAgU------GGCGG- -5'
8963 3' -59.9 NC_002512.2 + 83097 0.72 0.529877
Target:  5'- cCUCCUCcggguccggcgGUCCGGCGuCGGUCGggUCGUCg -3'
miRNA:   3'- cGAGGAG-----------CAGGCCGU-GCCAGU--GGCGG- -5'
8963 3' -59.9 NC_002512.2 + 16984 0.72 0.529877
Target:  5'- cGUUCCUC--CCGGCGCcgacucGGUCcaugGCCGCCg -3'
miRNA:   3'- -CGAGGAGcaGGCCGUG------CCAG----UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 222465 0.72 0.53357
Target:  5'- --aCCUCGcgCCGGCccucGCGGUCgucaacguggcggugGCCGCCu -3'
miRNA:   3'- cgaGGAGCa-GGCCG----UGCCAG---------------UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 101862 0.72 0.539125
Target:  5'- aGCUCUUCGacgCCGGgGCgGGUCuguuCUGCCu -3'
miRNA:   3'- -CGAGGAGCa--GGCCgUG-CCAGu---GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.