miRNA display CGI


Results 41 - 60 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 3' -59.9 NC_002512.2 + 212820 0.68 0.74549
Target:  5'- uCUCCUUccgcgccgccgggGUUgGGCGCGGgCGCCGUCc -3'
miRNA:   3'- cGAGGAG-------------CAGgCCGUGCCaGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 211490 0.66 0.861087
Target:  5'- --aCCUCGUCCaGCAgGaGcUCcuguGCCGCCa -3'
miRNA:   3'- cgaGGAGCAGGcCGUgC-C-AG----UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 210674 0.67 0.838925
Target:  5'- aCUCCUgGUCCaagcgcaacGGCAaGG-CGCCGCg -3'
miRNA:   3'- cGAGGAgCAGG---------CCGUgCCaGUGGCGg -5'
8963 3' -59.9 NC_002512.2 + 210620 0.69 0.728149
Target:  5'- --aCCUgGUCCGGCugGGcaACUGCg -3'
miRNA:   3'- cgaGGAgCAGGCCGugCCagUGGCGg -5'
8963 3' -59.9 NC_002512.2 + 209949 0.68 0.75539
Target:  5'- uGCUgCUCGaCCgGGCGCGGguccUCAaggUCGCCa -3'
miRNA:   3'- -CGAgGAGCaGG-CCGUGCC----AGU---GGCGG- -5'
8963 3' -59.9 NC_002512.2 + 209580 1.13 0.001297
Target:  5'- gGCUCCUCGUCCGGCACGGUCACCGCCa -3'
miRNA:   3'- -CGAGGAGCAGGCCGUGCCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 209469 0.67 0.838925
Target:  5'- gGCUCCggCGaacaCCGGCuGCucGUCGCCGUCu -3'
miRNA:   3'- -CGAGGa-GCa---GGCCG-UGc-CAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 206429 0.68 0.767823
Target:  5'- uCUCCgugCGUagcgaCGGCGCGGUgaaguagucgcugcgCACgGCCa -3'
miRNA:   3'- cGAGGa--GCAg----GCCGUGCCA---------------GUGgCGG- -5'
8963 3' -59.9 NC_002512.2 + 206176 0.69 0.718914
Target:  5'- cGCgUCUCGUCCuggGGCACGGaCACCa-- -3'
miRNA:   3'- -CGaGGAGCAGG---CCGUGCCaGUGGcgg -5'
8963 3' -59.9 NC_002512.2 + 206131 0.72 0.548428
Target:  5'- cGCagCggggCGUCCGGUcgccagACGGUCAUgGCCg -3'
miRNA:   3'- -CGagGa---GCAGGCCG------UGCCAGUGgCGG- -5'
8963 3' -59.9 NC_002512.2 + 205021 0.66 0.853873
Target:  5'- cGCgCCUCGgUCGGgGcCGcGUcCGCCGCCg -3'
miRNA:   3'- -CGaGGAGCaGGCCgU-GC-CA-GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 202334 0.67 0.814478
Target:  5'- aCUCCUacacgcuacuuagCGcCCGGCucgauUGGUCugaGCCGCCu -3'
miRNA:   3'- cGAGGA-------------GCaGGCCGu----GCCAG---UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 202113 0.77 0.286295
Target:  5'- cGCgUCCUCGUCagcugguGGCGcCGGUCucgGCCGCCg -3'
miRNA:   3'- -CG-AGGAGCAGg------CCGU-GCCAG---UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 200633 0.66 0.861087
Target:  5'- cCUCCUCGUCCccgucGGaggACGGaCugCGCg -3'
miRNA:   3'- cGAGGAGCAGG-----CCg--UGCCaGugGCGg -5'
8963 3' -59.9 NC_002512.2 + 198329 0.66 0.854602
Target:  5'- cGUUCacggCGUCCaGUucguaguugucguaGGUCACCGCCg -3'
miRNA:   3'- -CGAGga--GCAGGcCGug------------CCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 196733 0.69 0.737312
Target:  5'- cGCUUCgUCGUCCuGUACGGcUCgACCGgCg -3'
miRNA:   3'- -CGAGG-AGCAGGcCGUGCC-AG-UGGCgG- -5'
8963 3' -59.9 NC_002512.2 + 196154 0.67 0.798797
Target:  5'- cGCUCCUCGcUCCGGUcgACGaGggGCgaGCCc -3'
miRNA:   3'- -CGAGGAGC-AGGCCG--UGC-CagUGg-CGG- -5'
8963 3' -59.9 NC_002512.2 + 194402 0.67 0.815289
Target:  5'- cGCUCCgcca-CGGCACGaccgucauacacGUCGCCaGCCa -3'
miRNA:   3'- -CGAGGagcagGCCGUGC------------CAGUGG-CGG- -5'
8963 3' -59.9 NC_002512.2 + 194319 0.66 0.861087
Target:  5'- cUUCCUCGUggcCCGGgACGGUUGCgugguCGCg -3'
miRNA:   3'- cGAGGAGCA---GGCCgUGCCAGUG-----GCGg -5'
8963 3' -59.9 NC_002512.2 + 193952 0.75 0.400193
Target:  5'- --aCgUCGUCUGGCGCGaGagGCCGCCg -3'
miRNA:   3'- cgaGgAGCAGGCCGUGC-CagUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.