Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
8963 | 5' | -56.9 | NC_002512.2 | + | 54399 | 0.67 | 0.919557 |
Target: 5'- ----aGUACGACgUGCGGaacgucCUGGACGGc -3' miRNA: 3'- cucuaCAUGCUGgACGCC------GGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 81248 | 0.67 | 0.914012 |
Target: 5'- gGAGuccgGCGGCCUGCGGuuGaGGuCGAc -3' miRNA: 3'- -CUCuacaUGCUGGACGCCggC-CU-GCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 139016 | 0.67 | 0.908247 |
Target: 5'- aGGggGUcCGACg-GCGGCgCGGACGGc -3' miRNA: 3'- cUCuaCAuGCUGgaCGCCG-GCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 55229 | 0.67 | 0.919557 |
Target: 5'- -uGAUcGUGCGgcACCUGgagaaCGuGCCGGACGAc -3' miRNA: 3'- cuCUA-CAUGC--UGGAC-----GC-CGGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 133929 | 0.67 | 0.908247 |
Target: 5'- ---cUGUACGGCg-GCGGCCcGACGGc -3' miRNA: 3'- cucuACAUGCUGgaCGCCGGcCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 98263 | 0.67 | 0.902264 |
Target: 5'- cGAGA---GCGuCUUcGUGGCCGGGCGGg -3' miRNA: 3'- -CUCUacaUGCuGGA-CGCCGGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 137039 | 0.68 | 0.889651 |
Target: 5'- aGGGGUGgcCGACCgggGaCGGCCagGGAgGAg -3' miRNA: 3'- -CUCUACauGCUGGa--C-GCCGG--CCUgCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 27940 | 0.68 | 0.874108 |
Target: 5'- gGAGAcgGUcucccACGuacccgggcccgucGCCgauggGCGGCCGGGCGAg -3' miRNA: 3'- -CUCUa-CA-----UGC--------------UGGa----CGCCGGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 97368 | 0.68 | 0.883027 |
Target: 5'- gGAGcgGg--GACCgcgGCGGCCGGAgaCGGg -3' miRNA: 3'- -CUCuaCaugCUGGa--CGCCGGCCU--GCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 175881 | 0.68 | 0.889651 |
Target: 5'- cGGGAUGUuguccACGuagcucACCaGCGGCUGcGACGAg -3' miRNA: 3'- -CUCUACA-----UGC------UGGaCGCCGGC-CUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 196552 | 0.68 | 0.883027 |
Target: 5'- ----aGUGCGGcucCCUGCucccccucuccuGGCCGGACGGc -3' miRNA: 3'- cucuaCAUGCU---GGACG------------CCGGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 228028 | 0.68 | 0.876197 |
Target: 5'- cGAGGg--GCGACCggacgGCGGCgagacgcccgCGGACGGc -3' miRNA: 3'- -CUCUacaUGCUGGa----CGCCG----------GCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 149502 | 0.68 | 0.876197 |
Target: 5'- cGGGUGgucaaaaGGCC-GCGGCCGGAgCGGg -3' miRNA: 3'- cUCUACaug----CUGGaCGCCGGCCU-GCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 59432 | 0.68 | 0.885702 |
Target: 5'- ---cUGUGCGccaucgugagcaucuGCCUGCGGCgGGACc- -3' miRNA: 3'- cucuACAUGC---------------UGGACGCCGgCCUGcu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 53486 | 0.68 | 0.861934 |
Target: 5'- cAGGUGccACGAC--GCGGCgCGGACGAu -3' miRNA: 3'- cUCUACa-UGCUGgaCGCCG-GCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 194747 | 0.68 | 0.854511 |
Target: 5'- -cGAUGUGau-CUUGCGGCCGGA-GAc -3' miRNA: 3'- cuCUACAUgcuGGACGCCGGCCUgCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 74537 | 0.69 | 0.839111 |
Target: 5'- -cGAgGUACaGCCagGCGGCCGcGGCGAc -3' miRNA: 3'- cuCUaCAUGcUGGa-CGCCGGC-CUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 131733 | 0.69 | 0.814719 |
Target: 5'- cAGAcGcgGCGACCgccggggcggGCGGCCGcGACGAc -3' miRNA: 3'- cUCUaCa-UGCUGGa---------CGCCGGC-CUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 89568 | 0.69 | 0.814719 |
Target: 5'- -cGAUGUAaagcucGCCUGCGGCgGGugGc -3' miRNA: 3'- cuCUACAUgc----UGGACGCCGgCCugCu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 30764 | 0.69 | 0.831146 |
Target: 5'- uGAGGacgcUGUACGACCUGCuGCagaGGGUGAa -3' miRNA: 3'- -CUCU----ACAUGCUGGACGcCGg--CCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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