Results 61 - 80 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
8963 | 5' | -56.9 | NC_002512.2 | + | 92532 | 0.69 | 0.839111 |
Target: 5'- cGGAUcUAccCGGCCgcgGCGGCCGcGGCGAc -3' miRNA: 3'- cUCUAcAU--GCUGGa--CGCCGGC-CUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 222707 | 0.69 | 0.839111 |
Target: 5'- gGAGGaGUGCGucgccACCUGCcuGCUGGACGGc -3' miRNA: 3'- -CUCUaCAUGC-----UGGACGc-CGGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 212978 | 0.69 | 0.846901 |
Target: 5'- cGAGAUcUGCGACCUcaucgucgccGCGGCCGu-CGGg -3' miRNA: 3'- -CUCUAcAUGCUGGA----------CGCCGGCcuGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 96198 | 0.69 | 0.847671 |
Target: 5'- cGGGAg--GCGGCCgcgaggucggccacgGCGGCCGcGGCGGc -3' miRNA: 3'- -CUCUacaUGCUGGa--------------CGCCGGC-CUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 116834 | 0.69 | 0.846901 |
Target: 5'- -----uUGCGugCUGcCGGCCGuGACGAa -3' miRNA: 3'- cucuacAUGCugGAC-GCCGGC-CUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 30764 | 0.69 | 0.831146 |
Target: 5'- uGAGGacgcUGUACGACCUGCuGCagaGGGUGAa -3' miRNA: 3'- -CUCU----ACAUGCUGGACGcCGg--CCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 74537 | 0.69 | 0.839111 |
Target: 5'- -cGAgGUACaGCCagGCGGCCGcGGCGAc -3' miRNA: 3'- cuCUaCAUGcUGGa-CGCCGGC-CUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 131733 | 0.69 | 0.814719 |
Target: 5'- cAGAcGcgGCGACCgccggggcggGCGGCCGcGACGAc -3' miRNA: 3'- cUCUaCa-UGCUGGa---------CGCCGGC-CUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 89568 | 0.69 | 0.814719 |
Target: 5'- -cGAUGUAaagcucGCCUGCGGCgGGugGc -3' miRNA: 3'- cuCUACAUgc----UGGACGCCGgCCugCu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 122016 | 0.7 | 0.761988 |
Target: 5'- aAGGUGacgACGGCCUccacGCGGuCCGGACa- -3' miRNA: 3'- cUCUACa--UGCUGGA----CGCC-GGCCUGcu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 122676 | 0.7 | 0.788942 |
Target: 5'- cAGGUG-ACGGCgaGgGGCCcGGGCGAg -3' miRNA: 3'- cUCUACaUGCUGgaCgCCGG-CCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 200655 | 0.7 | 0.797676 |
Target: 5'- cGGAcUGcGCGACCcGCGGCCGG-CGu -3' miRNA: 3'- cUCU-ACaUGCUGGaCGCCGGCCuGCu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 113149 | 0.71 | 0.705416 |
Target: 5'- cGGGgcGc-CGGCCUcgccGCGGCCGGGCGGg -3' miRNA: 3'- -CUCuaCauGCUGGA----CGCCGGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 190653 | 0.71 | 0.751852 |
Target: 5'- aGAGGUGgACGguacagucgggacACCUGCGGCUGGAg-- -3' miRNA: 3'- -CUCUACaUGC-------------UGGACGCCGGCCUgcu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 45190 | 0.71 | 0.752778 |
Target: 5'- gGAGGUcu-CGACCgggaccgGCGGCgCGGACGGc -3' miRNA: 3'- -CUCUAcauGCUGGa------CGCCG-GCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 144649 | 0.71 | 0.705416 |
Target: 5'- cGGAUcUACGACCaccuguucGCGGuCCGGGCGAg -3' miRNA: 3'- cUCUAcAUGCUGGa-------CGCC-GGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 7921 | 0.72 | 0.656613 |
Target: 5'- -cGGUcGaACGACCuccgguuucguUGCGGCCGGGCGGa -3' miRNA: 3'- cuCUA-CaUGCUGG-----------ACGCCGGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 49178 | 0.72 | 0.656613 |
Target: 5'- aGGGAccUGUGCGACgaGCGGauccaguacaaCCGGGCGGc -3' miRNA: 3'- -CUCU--ACAUGCUGgaCGCC-----------GGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 122632 | 0.72 | 0.666441 |
Target: 5'- cGAGuAUGgaaACGcACCUGCGuuucgaGCCGGACGAc -3' miRNA: 3'- -CUC-UACa--UGC-UGGACGC------CGGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 89667 | 0.73 | 0.607348 |
Target: 5'- cGAGAcgcgGUGCGAag-GCGGCgGGGCGAg -3' miRNA: 3'- -CUCUa---CAUGCUggaCGCCGgCCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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