Results 81 - 85 of 85 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 8963 | 5' | -56.9 | NC_002512.2 | + | 89667 | 0.73 | 0.607348 |
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Target: 5'- cGAGAcgcgGUGCGAag-GCGGCgGGGCGAg -3' miRNA: 3'- -CUCUa---CAUGCUggaCGCCGgCCUGCU- -5' |
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| 8963 | 5' | -56.9 | NC_002512.2 | + | 48994 | 0.75 | 0.520236 |
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Target: 5'- gGAGcUGgaagACGGCCUGCGGUucgugacgaacgCGGACGAa -3' miRNA: 3'- -CUCuACa---UGCUGGACGCCG------------GCCUGCU- -5' |
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| 8963 | 5' | -56.9 | NC_002512.2 | + | 60730 | 0.79 | 0.334531 |
|
Target: 5'- aAGuAUGUauaaccGCGACCgcgGCGGCCGGGCGGa -3' miRNA: 3'- cUC-UACA------UGCUGGa--CGCCGGCCUGCU- -5' |
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| 8963 | 5' | -56.9 | NC_002512.2 | + | 31323 | 0.79 | 0.320234 |
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Target: 5'- aGGAUGUACGACCUGgacagcgcccUGGCCGGcuACGAc -3' miRNA: 3'- cUCUACAUGCUGGAC----------GCCGGCC--UGCU- -5' |
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| 8963 | 5' | -56.9 | NC_002512.2 | + | 209614 | 1.09 | 0.003937 |
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Target: 5'- cGAGAUGUACGACCUGCGGCCGGACGAg -3' miRNA: 3'- -CUCUACAUGCUGGACGCCGGCCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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