miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 5' -56.9 NC_002512.2 + 7921 0.72 0.656613
Target:  5'- -cGGUcGaACGACCuccgguuucguUGCGGCCGGGCGGa -3'
miRNA:   3'- cuCUA-CaUGCUGG-----------ACGCCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 119099 0.69 0.805418
Target:  5'- gGAGGUGcggGCGGCCU-CGGCgcagcugCGGACGGu -3'
miRNA:   3'- -CUCUACa--UGCUGGAcGCCG-------GCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 57613 0.66 0.948177
Target:  5'- cAGAUGUcccggGCGACCgaGCGGgCGugaGGCGAg -3'
miRNA:   3'- cUCUACA-----UGCUGGa-CGCCgGC---CUGCU- -5'
8963 5' -56.9 NC_002512.2 + 123726 0.66 0.929981
Target:  5'- uGGAccUGUGCucgGACCUGCggGGUCGGACc- -3'
miRNA:   3'- cUCU--ACAUG---CUGGACG--CCGGCCUGcu -5'
8963 5' -56.9 NC_002512.2 + 48994 0.75 0.520236
Target:  5'- gGAGcUGgaagACGGCCUGCGGUucgugacgaacgCGGACGAa -3'
miRNA:   3'- -CUCuACa---UGCUGGACGCCG------------GCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 13647 0.66 0.92488
Target:  5'- -uGAUG-ACGACCgucucgccGCGGCuccagcuccCGGACGAg -3'
miRNA:   3'- cuCUACaUGCUGGa-------CGCCG---------GCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 4984 0.67 0.921713
Target:  5'- gGAGGUGagACGGCgaacgggucgaagGCGGCCGG-CGAg -3'
miRNA:   3'- -CUCUACa-UGCUGga-----------CGCCGGCCuGCU- -5'
8963 5' -56.9 NC_002512.2 + 49178 0.72 0.656613
Target:  5'- aGGGAccUGUGCGACgaGCGGauccaguacaaCCGGGCGGc -3'
miRNA:   3'- -CUCU--ACAUGCUGgaCGCC-----------GGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 122632 0.72 0.666441
Target:  5'- cGAGuAUGgaaACGcACCUGCGuuucgaGCCGGACGAc -3'
miRNA:   3'- -CUC-UACa--UGC-UGGACGC------CGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 228705 0.66 0.929981
Target:  5'- aGAGAgugcaaaggGUGCGAagaagaaCUGCGGagaCGGACGc -3'
miRNA:   3'- -CUCUa--------CAUGCUg------GACGCCg--GCCUGCu -5'
8963 5' -56.9 NC_002512.2 + 187995 0.67 0.919557
Target:  5'- -cGAUGcauCGAgaCUGUGGCCGGAgCGGg -3'
miRNA:   3'- cuCUACau-GCUg-GACGCCGGCCU-GCU- -5'
8963 5' -56.9 NC_002512.2 + 54399 0.67 0.919557
Target:  5'- ----aGUACGACgUGCGGaacgucCUGGACGGc -3'
miRNA:   3'- cucuaCAUGCUGgACGCC------GGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 55229 0.67 0.919557
Target:  5'- -uGAUcGUGCGgcACCUGgagaaCGuGCCGGACGAc -3'
miRNA:   3'- cuCUA-CAUGC--UGGAC-----GC-CGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 30764 0.69 0.831146
Target:  5'- uGAGGacgcUGUACGACCUGCuGCagaGGGUGAa -3'
miRNA:   3'- -CUCU----ACAUGCUGGACGcCGg--CCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 74537 0.69 0.839111
Target:  5'- -cGAgGUACaGCCagGCGGCCGcGGCGAc -3'
miRNA:   3'- cuCUaCAUGcUGGa-CGCCGGC-CUGCU- -5'
8963 5' -56.9 NC_002512.2 + 194747 0.68 0.854511
Target:  5'- -cGAUGUGau-CUUGCGGCCGGA-GAc -3'
miRNA:   3'- cuCUACAUgcuGGACGCCGGCCUgCU- -5'
8963 5' -56.9 NC_002512.2 + 53486 0.68 0.861934
Target:  5'- cAGGUGccACGAC--GCGGCgCGGACGAu -3'
miRNA:   3'- cUCUACa-UGCUGgaCGCCG-GCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 27940 0.68 0.874108
Target:  5'- gGAGAcgGUcucccACGuacccgggcccgucGCCgauggGCGGCCGGGCGAg -3'
miRNA:   3'- -CUCUa-CA-----UGC--------------UGGa----CGCCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 81248 0.67 0.914012
Target:  5'- gGAGuccgGCGGCCUGCGGuuGaGGuCGAc -3'
miRNA:   3'- -CUCuacaUGCUGGACGCCggC-CU-GCU- -5'
8963 5' -56.9 NC_002512.2 + 139016 0.67 0.908247
Target:  5'- aGGggGUcCGACg-GCGGCgCGGACGGc -3'
miRNA:   3'- cUCuaCAuGCUGgaCGCCG-GCCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.