Results 61 - 80 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8963 | 5' | -56.9 | NC_002512.2 | + | 89667 | 0.73 | 0.607348 |
Target: 5'- cGAGAcgcgGUGCGAag-GCGGCgGGGCGAg -3' miRNA: 3'- -CUCUa---CAUGCUggaCGCCGgCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 81248 | 0.67 | 0.914012 |
Target: 5'- gGAGuccgGCGGCCUGCGGuuGaGGuCGAc -3' miRNA: 3'- -CUCuacaUGCUGGACGCCggC-CU-GCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 55229 | 0.67 | 0.919557 |
Target: 5'- -uGAUcGUGCGgcACCUGgagaaCGuGCCGGACGAc -3' miRNA: 3'- cuCUA-CAUGC--UGGAC-----GC-CGGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 54399 | 0.67 | 0.919557 |
Target: 5'- ----aGUACGACgUGCGGaacgucCUGGACGGc -3' miRNA: 3'- cucuaCAUGCUGgACGCC------GGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 130839 | 0.66 | 0.948177 |
Target: 5'- -cGcgGU-CGAguaCCgGCGGUCGGGCGAg -3' miRNA: 3'- cuCuaCAuGCU---GGaCGCCGGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 142103 | 0.66 | 0.948177 |
Target: 5'- cGGAcccgGUAcCGACCcgucgGCGGCCGGAg-- -3' miRNA: 3'- cUCUa---CAU-GCUGGa----CGCCGGCCUgcu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 120773 | 0.66 | 0.948177 |
Target: 5'- uGGAcucgGCGGCCgucggcggggGCGGCgGGACGGc -3' miRNA: 3'- cUCUaca-UGCUGGa---------CGCCGgCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 57039 | 0.66 | 0.948177 |
Target: 5'- gGAGGccgcGUccgACGACCgggGgGcGCCGGGCGAa -3' miRNA: 3'- -CUCUa---CA---UGCUGGa--CgC-CGGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 111897 | 0.66 | 0.943957 |
Target: 5'- --cAUGgACGACgaGCGGCCGcGCGGg -3' miRNA: 3'- cucUACaUGCUGgaCGCCGGCcUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 79377 | 0.66 | 0.943957 |
Target: 5'- uGGAacUGcacccCGACCcGCGGgCGGACGAg -3' miRNA: 3'- cUCU--ACau---GCUGGaCGCCgGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 133982 | 0.66 | 0.939519 |
Target: 5'- cGAGGUccucGU-CGGCaccCGGCCGGGCGAc -3' miRNA: 3'- -CUCUA----CAuGCUGgacGCCGGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 118975 | 0.66 | 0.939519 |
Target: 5'- gGAGGUGcUGCagaacuGCCUGCGGCUGGcCu- -3' miRNA: 3'- -CUCUAC-AUGc-----UGGACGCCGGCCuGcu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 80878 | 0.66 | 0.939519 |
Target: 5'- cGGGcgGUccgcgGCGGCCcccCGGCCGGugGu -3' miRNA: 3'- -CUCuaCA-----UGCUGGac-GCCGGCCugCu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 18086 | 0.66 | 0.939519 |
Target: 5'- ----gGUGCG-CC-GCGGCgGGACGGc -3' miRNA: 3'- cucuaCAUGCuGGaCGCCGgCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 77509 | 0.66 | 0.93486 |
Target: 5'- cAGAUGUcuACGACCggccaCGGCCGGuCu- -3' miRNA: 3'- cUCUACA--UGCUGGac---GCCGGCCuGcu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 123726 | 0.66 | 0.929981 |
Target: 5'- uGGAccUGUGCucgGACCUGCggGGUCGGACc- -3' miRNA: 3'- cUCU--ACAUG---CUGGACG--CCGGCCUGcu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 133686 | 0.66 | 0.926947 |
Target: 5'- --cGUGgcCGACCUcGCGGCCgccucccggaccaccGGACGGu -3' miRNA: 3'- cucUACauGCUGGA-CGCCGG---------------CCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 13647 | 0.66 | 0.92488 |
Target: 5'- -uGAUG-ACGACCgucucgccGCGGCuccagcuccCGGACGAg -3' miRNA: 3'- cuCUACaUGCUGGa-------CGCCG---------GCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 4984 | 0.67 | 0.921713 |
Target: 5'- gGAGGUGagACGGCgaacgggucgaagGCGGCCGG-CGAg -3' miRNA: 3'- -CUCUACa-UGCUGga-----------CGCCGGCCuGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 187995 | 0.67 | 0.919557 |
Target: 5'- -cGAUGcauCGAgaCUGUGGCCGGAgCGGg -3' miRNA: 3'- cuCUACau-GCUg-GACGCCGGCCU-GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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