Results 81 - 85 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8963 | 5' | -56.9 | NC_002512.2 | + | 13647 | 0.66 | 0.92488 |
Target: 5'- -uGAUG-ACGACCgucucgccGCGGCuccagcuccCGGACGAg -3' miRNA: 3'- cuCUACaUGCUGGa-------CGCCG---------GCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 133686 | 0.66 | 0.926947 |
Target: 5'- --cGUGgcCGACCUcGCGGCCgccucccggaccaccGGACGGu -3' miRNA: 3'- cucUACauGCUGGA-CGCCGG---------------CCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 123726 | 0.66 | 0.929981 |
Target: 5'- uGGAccUGUGCucgGACCUGCggGGUCGGACc- -3' miRNA: 3'- cUCU--ACAUG---CUGGACG--CCGGCCUGcu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 228705 | 0.66 | 0.929981 |
Target: 5'- aGAGAgugcaaaggGUGCGAagaagaaCUGCGGagaCGGACGc -3' miRNA: 3'- -CUCUa--------CAUGCUg------GACGCCg--GCCUGCu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 57613 | 0.66 | 0.948177 |
Target: 5'- cAGAUGUcccggGCGACCgaGCGGgCGugaGGCGAg -3' miRNA: 3'- cUCUACA-----UGCUGGa-CGCCgGC---CUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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