miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8964 5' -57.5 NC_002512.2 + 100281 0.66 0.902264
Target:  5'- aGCUcgGCGAgCGGgGCGAguucgucgGGGGCGACg- -3'
miRNA:   3'- cUGA--UGCU-GCUgCGCU--------CCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 100072 0.66 0.902264
Target:  5'- cGGCgcCGACGACgagaagagGCGgaAGGGGgGACUGc -3'
miRNA:   3'- -CUGauGCUGCUG--------CGC--UCCCCgCUGAU- -5'
8964 5' -57.5 NC_002512.2 + 164641 0.66 0.902264
Target:  5'- gGACgGCaGGCGGCGaucGGGGUGGCUAa -3'
miRNA:   3'- -CUGaUG-CUGCUGCgcuCCCCGCUGAU- -5'
8964 5' -57.5 NC_002512.2 + 11683 0.66 0.902264
Target:  5'- cGGCccgagGCGGgGGCcCGAGGGGCGAg-- -3'
miRNA:   3'- -CUGa----UGCUgCUGcGCUCCCCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 97205 0.66 0.902264
Target:  5'- -uCUGCGGCGGCGgGccGGGCGGg-- -3'
miRNA:   3'- cuGAUGCUGCUGCgCucCCCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 226752 0.67 0.896064
Target:  5'- gGGCUccgGCcgGACGACGCGGaGGGCGAg-- -3'
miRNA:   3'- -CUGA---UG--CUGCUGCGCUcCCCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 97823 0.67 0.896064
Target:  5'- gGACgcggaguagAgGGCGGCGCGGGGgaagcggaGGCGACg- -3'
miRNA:   3'- -CUGa--------UgCUGCUGCGCUCC--------CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 90064 0.67 0.896064
Target:  5'- cGACcAUGACGuuCGCcGGGGGCGGgUGg -3'
miRNA:   3'- -CUGaUGCUGCu-GCGcUCCCCGCUgAU- -5'
8964 5' -57.5 NC_002512.2 + 95622 0.67 0.889651
Target:  5'- cGCgcggACGACGAagGCcaGGGGGCGGCUc -3'
miRNA:   3'- cUGa---UGCUGCUg-CGc-UCCCCGCUGAu -5'
8964 5' -57.5 NC_002512.2 + 220631 0.67 0.883027
Target:  5'- gGACUGCGACGACGuCGuccuGuGGcGCGAg-- -3'
miRNA:   3'- -CUGAUGCUGCUGC-GCu---C-CC-CGCUgau -5'
8964 5' -57.5 NC_002512.2 + 74552 0.67 0.883027
Target:  5'- cGGCcGCGGCGACgggaGCGAGGuuGGCGAg-- -3'
miRNA:   3'- -CUGaUGCUGCUG----CGCUCC--CCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 119758 0.67 0.883027
Target:  5'- uACUACGAgCGACGCGucGcGGuCGACg- -3'
miRNA:   3'- cUGAUGCU-GCUGCGCucC-CC-GCUGau -5'
8964 5' -57.5 NC_002512.2 + 226704 0.67 0.881
Target:  5'- ---cGCGGCGGCGuCGAGcgacgggaggccgcGGGCGACg- -3'
miRNA:   3'- cugaUGCUGCUGC-GCUC--------------CCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 219411 0.67 0.876197
Target:  5'- cGCcGCGACGcccACGCccGGGGCGGCg- -3'
miRNA:   3'- cUGaUGCUGC---UGCGcuCCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 15454 0.67 0.876197
Target:  5'- cGACguagACGGgGACGCGGuccucGGGcGCGGCg- -3'
miRNA:   3'- -CUGa---UGCUgCUGCGCU-----CCC-CGCUGau -5'
8964 5' -57.5 NC_002512.2 + 57950 0.67 0.876197
Target:  5'- aGACggGCG-CGGCGCGGcGGGCGAa-- -3'
miRNA:   3'- -CUGa-UGCuGCUGCGCUcCCCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 7366 0.67 0.869164
Target:  5'- cGCgACGGCGGcCGCGGcGGGCGGCc- -3'
miRNA:   3'- cUGaUGCUGCU-GCGCUcCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 57045 0.67 0.869164
Target:  5'- cGCgucCGACGAC-CGGGGGGCGcCg- -3'
miRNA:   3'- cUGau-GCUGCUGcGCUCCCCGCuGau -5'
8964 5' -57.5 NC_002512.2 + 92702 0.67 0.86845
Target:  5'- gGGCggacCGACGACGCcguacggacguccGGGGGGCGcGCUc -3'
miRNA:   3'- -CUGau--GCUGCUGCG-------------CUCCCCGC-UGAu -5'
8964 5' -57.5 NC_002512.2 + 10933 0.68 0.861934
Target:  5'- ----cCGGCGACG-GAGGGGuCGACg- -3'
miRNA:   3'- cugauGCUGCUGCgCUCCCC-GCUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.