miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 5' -59.6 NC_002512.2 + 111233 0.67 0.765189
Target:  5'- -cGGGCGGCcgGGCGC-CCGgaGCGUc -3'
miRNA:   3'- uaCUUGCCGa-CCGUGuGGCggCGCAa -5'
8966 5' -59.6 NC_002512.2 + 179312 0.67 0.773403
Target:  5'- -cGGGCGGCgaggcgGGCagauccuGCAgCGCCGCGc- -3'
miRNA:   3'- uaCUUGCCGa-----CCG-------UGUgGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 201743 0.67 0.774309
Target:  5'- --cGACGGCUGGgGCGCCGaucCCGgGg- -3'
miRNA:   3'- uacUUGCCGACCgUGUGGC---GGCgCaa -5'
8966 5' -59.6 NC_002512.2 + 154595 0.67 0.774309
Target:  5'- --cGACGGC-GGCAucguCGCCGCCGCc-- -3'
miRNA:   3'- uacUUGCCGaCCGU----GUGGCGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 45423 0.67 0.765189
Target:  5'- --cGACGGC-GGCGC-CgGCCGCGg- -3'
miRNA:   3'- uacUUGCCGaCCGUGuGgCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 133243 0.67 0.755957
Target:  5'- -aGGGCGGC-GGCGCcCCGgUCGCGg- -3'
miRNA:   3'- uaCUUGCCGaCCGUGuGGC-GGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 227672 0.67 0.746623
Target:  5'- -cGAagcGCGGCUGGCGa--CGCUGCGc- -3'
miRNA:   3'- uaCU---UGCCGACCGUgugGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 27974 0.67 0.765189
Target:  5'- gAUGGGCGGCcgGGCGagauuCCGgCGCGg- -3'
miRNA:   3'- -UACUUGCCGa-CCGUgu---GGCgGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 133657 0.67 0.746623
Target:  5'- -gGGGCGGUcgccGC-CGCCGCCGCGg- -3'
miRNA:   3'- uaCUUGCCGac--CGuGUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 137208 0.67 0.737194
Target:  5'- -cGGugGGC-GGCGCGCCcGgCGCGg- -3'
miRNA:   3'- uaCUugCCGaCCGUGUGG-CgGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 103101 0.67 0.737194
Target:  5'- -gGGACgGGCgcGGCACgcgucgccgccGCCGCCGCGc- -3'
miRNA:   3'- uaCUUG-CCGa-CCGUG-----------UGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 29017 0.68 0.702599
Target:  5'- gGUGGGCGGCgUGGUcgACGCCaugcggcagagacgcGCCGCGc- -3'
miRNA:   3'- -UACUUGCCG-ACCG--UGUGG---------------CGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 202129 0.68 0.718087
Target:  5'- gGUGGcgcCGGuCUcGGC-CGCCGCCGCGg- -3'
miRNA:   3'- -UACUu--GCC-GA-CCGuGUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 116601 0.68 0.718087
Target:  5'- -aGGGCGGgaGGCcCGCCGCgGCu-- -3'
miRNA:   3'- uaCUUGCCgaCCGuGUGGCGgCGcaa -5'
8966 5' -59.6 NC_002512.2 + 117694 0.68 0.698704
Target:  5'- -cGAGCuGCgUGGCGCACCuGCgGCGg- -3'
miRNA:   3'- uaCUUGcCG-ACCGUGUGG-CGgCGCaa -5'
8966 5' -59.6 NC_002512.2 + 148995 0.68 0.688929
Target:  5'- cUGAAccacCGGCcGGgGgGCCGCCGCGg- -3'
miRNA:   3'- uACUU----GCCGaCCgUgUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 212441 0.68 0.67911
Target:  5'- -cGGGcCGGCcGGcCGCgACCGCCGCGa- -3'
miRNA:   3'- uaCUU-GCCGaCC-GUG-UGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 49211 0.68 0.709395
Target:  5'- -cGGGCGGCgugugagaucuucggGGC-CACCGCgGCGg- -3'
miRNA:   3'- uaCUUGCCGa--------------CCGuGUGGCGgCGCaa -5'
8966 5' -59.6 NC_002512.2 + 90927 0.68 0.688929
Target:  5'- -nGAACggGGCcGGCGCgGCCGCCGcCGUc -3'
miRNA:   3'- uaCUUG--CCGaCCGUG-UGGCGGC-GCAa -5'
8966 5' -59.6 NC_002512.2 + 148131 0.68 0.67911
Target:  5'- aGUGAGCGuucuCUaGCGCGCCGCgGCGUg -3'
miRNA:   3'- -UACUUGCc---GAcCGUGUGGCGgCGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.