Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
8966 | 5' | -59.6 | NC_002512.2 | + | 227672 | 0.67 | 0.746623 |
Target: 5'- -cGAagcGCGGCUGGCGa--CGCUGCGc- -3' miRNA: 3'- uaCU---UGCCGACCGUgugGCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 133243 | 0.67 | 0.755957 |
Target: 5'- -aGGGCGGC-GGCGCcCCGgUCGCGg- -3' miRNA: 3'- uaCUUGCCGaCCGUGuGGC-GGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 27974 | 0.67 | 0.765189 |
Target: 5'- gAUGGGCGGCcgGGCGagauuCCGgCGCGg- -3' miRNA: 3'- -UACUUGCCGa-CCGUgu---GGCgGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 45423 | 0.67 | 0.765189 |
Target: 5'- --cGACGGC-GGCGC-CgGCCGCGg- -3' miRNA: 3'- uacUUGCCGaCCGUGuGgCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 154595 | 0.67 | 0.774309 |
Target: 5'- --cGACGGC-GGCAucguCGCCGCCGCc-- -3' miRNA: 3'- uacUUGCCGaCCGU----GUGGCGGCGcaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 179312 | 0.67 | 0.773403 |
Target: 5'- -cGGGCGGCgaggcgGGCagauccuGCAgCGCCGCGc- -3' miRNA: 3'- uaCUUGCCGa-----CCG-------UGUgGCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 91888 | 0.67 | 0.746623 |
Target: 5'- -cGGGCGGCggcgcGGCGCACgGcCCGCu-- -3' miRNA: 3'- uaCUUGCCGa----CCGUGUGgC-GGCGcaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 113270 | 0.67 | 0.72768 |
Target: 5'- -gGGGCGGCcGGCGgggcaGCCGCgGCGg- -3' miRNA: 3'- uaCUUGCCGaCCGUg----UGGCGgCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 111233 | 0.67 | 0.765189 |
Target: 5'- -cGGGCGGCcgGGCGC-CCGgaGCGUc -3' miRNA: 3'- uaCUUGCCGa-CCGUGuGGCggCGCAa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 226799 | 0.67 | 0.746623 |
Target: 5'- cGUGGucuCGGCcgccgccgUGGCcgccgcCGCCGCCGCGUc -3' miRNA: 3'- -UACUu--GCCG--------ACCGu-----GUGGCGGCGCAa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 221760 | 0.67 | 0.737194 |
Target: 5'- -cGAACGGCagcugGGCG-GCCGUCGUGUc -3' miRNA: 3'- uaCUUGCCGa----CCGUgUGGCGGCGCAa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 186201 | 0.66 | 0.783311 |
Target: 5'- cUGGAgGGCUcgGGCGCcgaugaCGCCGCGg- -3' miRNA: 3'- uACUUgCCGA--CCGUGug----GCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 227671 | 0.66 | 0.783311 |
Target: 5'- -aGAGCGGC-GGC--GCCGCCgGCGa- -3' miRNA: 3'- uaCUUGCCGaCCGugUGGCGG-CGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 56157 | 0.66 | 0.792184 |
Target: 5'- gAUGAugGGgUGGUugccgaGCACgGUCGCGg- -3' miRNA: 3'- -UACUugCCgACCG------UGUGgCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 220343 | 0.66 | 0.782416 |
Target: 5'- -cGGACGGCcucgucaacgccgUGGCcguggcCGCCGCCGcCGUg -3' miRNA: 3'- uaCUUGCCG-------------ACCGu-----GUGGCGGC-GCAa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 170047 | 0.66 | 0.783311 |
Target: 5'- ---cAUGGCcaUGGCcgcCGCCGCCGCGg- -3' miRNA: 3'- uacuUGCCG--ACCGu--GUGGCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 224619 | 0.66 | 0.783311 |
Target: 5'- -cGAcCgGGCUcgGGguCGCCGCCGCGg- -3' miRNA: 3'- uaCUuG-CCGA--CCguGUGGCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 214234 | 0.66 | 0.792184 |
Target: 5'- --aGGCGGCUcgucGGCuCGCCGCcCGCGg- -3' miRNA: 3'- uacUUGCCGA----CCGuGUGGCG-GCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 4581 | 0.66 | 0.792184 |
Target: 5'- -gGGGCGGCggaGGagGCGgCGCCGCGg- -3' miRNA: 3'- uaCUUGCCGa--CCg-UGUgGCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 71379 | 0.66 | 0.792184 |
Target: 5'- -gGAGC-GCUGGCGCAg-GCCGCGg- -3' miRNA: 3'- uaCUUGcCGACCGUGUggCGGCGCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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