Results 61 - 80 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8966 | 5' | -59.6 | NC_002512.2 | + | 126179 | 0.66 | 0.817959 |
Target: 5'- -gGAucAUGGC-GGCGCccccucCCGCCGCGUc -3' miRNA: 3'- uaCU--UGCCGaCCGUGu-----GGCGGCGCAa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 74618 | 0.66 | 0.817959 |
Target: 5'- -gGAGCGGa--GCGCgagACCGCCGCGc- -3' miRNA: 3'- uaCUUGCCgacCGUG---UGGCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 80697 | 0.66 | 0.812912 |
Target: 5'- -cGAGCGGCguccggggggcgagGGCGCGCgGgcCCGCGg- -3' miRNA: 3'- uaCUUGCCGa-------------CCGUGUGgC--GGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 37195 | 0.66 | 0.809516 |
Target: 5'- --aGACGGCcucGGCGCGCCGCCa---- -3' miRNA: 3'- uacUUGCCGa--CCGUGUGGCGGcgcaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 69874 | 0.66 | 0.800922 |
Target: 5'- -cGAACGGCccUGGUucgGCACCGCCa---- -3' miRNA: 3'- uaCUUGCCG--ACCG---UGUGGCGGcgcaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 117137 | 0.66 | 0.783311 |
Target: 5'- -gGGACGGCcGGCucucCGCCuuCCGCGUg -3' miRNA: 3'- uaCUUGCCGaCCGu---GUGGc-GGCGCAa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 56157 | 0.66 | 0.792184 |
Target: 5'- gAUGAugGGgUGGUugccgaGCACgGUCGCGg- -3' miRNA: 3'- -UACUugCCgACCG------UGUGgCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 4581 | 0.66 | 0.792184 |
Target: 5'- -gGGGCGGCggaGGagGCGgCGCCGCGg- -3' miRNA: 3'- uaCUUGCCGa--CCg-UGUgGCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 121142 | 0.66 | 0.826243 |
Target: 5'- --cGACGGC-GGCcgagACGCCGgCCGCGg- -3' miRNA: 3'- uacUUGCCGaCCG----UGUGGC-GGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 167082 | 0.66 | 0.826243 |
Target: 5'- -cGAcauGCuGCUGGC-CACCuCCGCGUa -3' miRNA: 3'- uaCU---UGcCGACCGuGUGGcGGCGCAa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 224619 | 0.66 | 0.783311 |
Target: 5'- -cGAcCgGGCUcgGGguCGCCGCCGCGg- -3' miRNA: 3'- uaCUuG-CCGA--CCguGUGGCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 214234 | 0.66 | 0.792184 |
Target: 5'- --aGGCGGCUcgucGGCuCGCCGCcCGCGg- -3' miRNA: 3'- uacUUGCCGA----CCGuGUGGCG-GCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 118335 | 0.66 | 0.809516 |
Target: 5'- -cGGACGcGCUGGUggaGCGCCccuGCCGCu-- -3' miRNA: 3'- uaCUUGC-CGACCG---UGUGG---CGGCGcaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 153279 | 0.66 | 0.809516 |
Target: 5'- cUGGuCGGCUGGCu--CCGCUGgGUc -3' miRNA: 3'- uACUuGCCGACCGuguGGCGGCgCAa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 153372 | 0.66 | 0.809516 |
Target: 5'- cUGGgcgGCGGCUGGCGguCCGgaGCGa- -3' miRNA: 3'- uACU---UGCCGACCGUguGGCggCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 210915 | 0.66 | 0.809516 |
Target: 5'- ----cCGGCUcuccGGCAuCAUCGCCGCGa- -3' miRNA: 3'- uacuuGCCGA----CCGU-GUGGCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 212359 | 0.66 | 0.817959 |
Target: 5'- -aGAGCGaGCUGGCcgccuACGCCgacGCCGaCGUc -3' miRNA: 3'- uaCUUGC-CGACCG-----UGUGG---CGGC-GCAa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 137966 | 0.66 | 0.817959 |
Target: 5'- -aGu-CGGCcgccgacGGCGCGCCGCCGCc-- -3' miRNA: 3'- uaCuuGCCGa------CCGUGUGGCGGCGcaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 207395 | 0.66 | 0.823775 |
Target: 5'- gAUGGACGGCUGcuGCGCGCUcauguccauggccuGCUGCa-- -3' miRNA: 3'- -UACUUGCCGAC--CGUGUGG--------------CGGCGcaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 220133 | 0.66 | 0.826243 |
Target: 5'- -gGGGCGGCgGGUccgGCuCCGCCGCc-- -3' miRNA: 3'- uaCUUGCCGaCCG---UGuGGCGGCGcaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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