Results 81 - 85 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8966 | 5' | -59.6 | NC_002512.2 | + | 29017 | 0.68 | 0.702599 |
Target: 5'- gGUGGGCGGCgUGGUcgACGCCaugcggcagagacgcGCCGCGc- -3' miRNA: 3'- -UACUUGCCG-ACCG--UGUGG---------------CGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 27974 | 0.67 | 0.765189 |
Target: 5'- gAUGGGCGGCcgGGCGagauuCCGgCGCGg- -3' miRNA: 3'- -UACUUGCCGa-CCGUgu---GGCgGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 7383 | 0.66 | 0.826243 |
Target: 5'- -cGGGCGGCcaGGCGCagaaggcggccACCGCCaCGUUg -3' miRNA: 3'- uaCUUGCCGa-CCGUG-----------UGGCGGcGCAA- -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 4893 | 0.71 | 0.50315 |
Target: 5'- -gGAGCGGCgacgggaagagGGCGcCGCCGCCGCc-- -3' miRNA: 3'- uaCUUGCCGa----------CCGU-GUGGCGGCGcaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 4581 | 0.66 | 0.792184 |
Target: 5'- -gGGGCGGCggaGGagGCGgCGCCGCGg- -3' miRNA: 3'- uaCUUGCCGa--CCg-UGUgGCGGCGCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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