miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 5' -59.6 NC_002512.2 + 150536 0.75 0.320507
Target:  5'- --cGGCGGCcgcgagGGUACGCCGCCGCGa- -3'
miRNA:   3'- uacUUGCCGa-----CCGUGUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 162154 0.69 0.619706
Target:  5'- -----aGGCcGGCACGCCGaCCGCGa- -3'
miRNA:   3'- uacuugCCGaCCGUGUGGC-GGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 119827 0.66 0.826243
Target:  5'- uUGAuguuGCaGGCgauGCGCACCGCCGCc-- -3'
miRNA:   3'- uACU----UG-CCGac-CGUGUGGCGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 71379 0.66 0.792184
Target:  5'- -gGAGC-GCUGGCGCAg-GCCGCGg- -3'
miRNA:   3'- uaCUUGcCGACCGUGUggCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 138547 0.73 0.388953
Target:  5'- -cGAGCaGCUGGCaggagcggaGCGCCGCCGUGa- -3'
miRNA:   3'- uaCUUGcCGACCG---------UGUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 117137 0.66 0.783311
Target:  5'- -gGGACGGCcGGCucucCGCCuuCCGCGUg -3'
miRNA:   3'- uaCUUGCCGaCCGu---GUGGc-GGCGCAa -5'
8966 5' -59.6 NC_002512.2 + 71011 0.66 0.783311
Target:  5'- -aGGACGGggGGC-CGCCGCCGg--- -3'
miRNA:   3'- uaCUUGCCgaCCGuGUGGCGGCgcaa -5'
8966 5' -59.6 NC_002512.2 + 68904 0.7 0.550878
Target:  5'- -gGGGCGGUcgUGcuGCugGCCGCCGCGg- -3'
miRNA:   3'- uaCUUGCCG--AC--CGugUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 90905 0.7 0.5606
Target:  5'- -gGGACGGCcGGaCugGCgGCCGCGa- -3'
miRNA:   3'- uaCUUGCCGaCC-GugUGgCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 4581 0.66 0.792184
Target:  5'- -gGGGCGGCggaGGagGCGgCGCCGCGg- -3'
miRNA:   3'- uaCUUGCCGa--CCg-UGUgGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 154595 0.67 0.774309
Target:  5'- --cGACGGC-GGCAucguCGCCGCCGCc-- -3'
miRNA:   3'- uacUUGCCGaCCGU----GUGGCGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 45423 0.67 0.765189
Target:  5'- --cGACGGC-GGCGC-CgGCCGCGg- -3'
miRNA:   3'- uacUUGCCGaCCGUGuGgCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 27974 0.67 0.765189
Target:  5'- gAUGGGCGGCcgGGCGagauuCCGgCGCGg- -3'
miRNA:   3'- -UACUUGCCGa-CCGUgu---GGCgGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 31657 0.69 0.619706
Target:  5'- -cGGACGGCgcgGGCGCGgCCGUgGUGg- -3'
miRNA:   3'- uaCUUGCCGa--CCGUGU-GGCGgCGCaa -5'
8966 5' -59.6 NC_002512.2 + 96287 0.69 0.619706
Target:  5'- -gGGGgGGCUgccgcgGGC-CGCCGCCGCGg- -3'
miRNA:   3'- uaCUUgCCGA------CCGuGUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 110285 0.69 0.629627
Target:  5'- -cGAGCGGCgagGGCgACACUGCuggCGCGa- -3'
miRNA:   3'- uaCUUGCCGa--CCG-UGUGGCG---GCGCaa -5'
8966 5' -59.6 NC_002512.2 + 148131 0.68 0.67911
Target:  5'- aGUGAGCGuucuCUaGCGCGCCGCgGCGUg -3'
miRNA:   3'- -UACUUGCc---GAcCGUGUGGCGgCGCAa -5'
8966 5' -59.6 NC_002512.2 + 90927 0.68 0.688929
Target:  5'- -nGAACggGGCcGGCGCgGCCGCCGcCGUc -3'
miRNA:   3'- uaCUUG--CCGaCCGUG-UGGCGGC-GCAa -5'
8966 5' -59.6 NC_002512.2 + 133243 0.67 0.755957
Target:  5'- -aGGGCGGC-GGCGCcCCGgUCGCGg- -3'
miRNA:   3'- uaCUUGCCGaCCGUGuGGC-GGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 227672 0.67 0.746623
Target:  5'- -cGAagcGCGGCUGGCGa--CGCUGCGc- -3'
miRNA:   3'- uaCU---UGCCGACCGUgugGCGGCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.