miRNA display CGI


Results 21 - 40 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 3' -52.1 NC_002512.2 + 81840 0.66 0.993751
Target:  5'- uCUGCcggaccGGGUcgggGAGCGUCGGCgggaagcgacagaGGCCCa -3'
miRNA:   3'- -GACGu-----CCCGaa--CUUGUAGUUG-------------UCGGG- -5'
8967 3' -52.1 NC_002512.2 + 100640 0.66 0.993751
Target:  5'- -gGCAgGGGCUUGAACG-CGggaugguACAGgUCCg -3'
miRNA:   3'- gaCGU-CCCGAACUUGUaGU-------UGUC-GGG- -5'
8967 3' -52.1 NC_002512.2 + 91916 0.66 0.992908
Target:  5'- -gGCGGcGGCgcgc-CGUCGGCGGCCg -3'
miRNA:   3'- gaCGUC-CCGaacuuGUAGUUGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 156574 0.66 0.992908
Target:  5'- gCUGCGcucGGuGCgcuu-CGUCAGCGGCCUg -3'
miRNA:   3'- -GACGU---CC-CGaacuuGUAGUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 143730 0.66 0.992908
Target:  5'- -aGCAGGGCcucgGAggcggccgcgGCGUCGGCuuccaGGUCCg -3'
miRNA:   3'- gaCGUCCCGaa--CU----------UGUAGUUG-----UCGGG- -5'
8967 3' -52.1 NC_002512.2 + 152878 0.66 0.992504
Target:  5'- gUGCGGGaGCgguccccggucggUGAACGggAGCGGUCCc -3'
miRNA:   3'- gACGUCC-CGa------------ACUUGUagUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 219071 0.66 0.991866
Target:  5'- -cGC-GGGCUUcGAGC-UCGACGuGCUCa -3'
miRNA:   3'- gaCGuCCCGAA-CUUGuAGUUGU-CGGG- -5'
8967 3' -52.1 NC_002512.2 + 158492 0.66 0.991866
Target:  5'- -cGCgGGGGCgcaGGACuUCcGCGGCCUg -3'
miRNA:   3'- gaCG-UCCCGaa-CUUGuAGuUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 86177 0.66 0.991866
Target:  5'- gCUGCGGGaGC-UGGAgGUC-GC-GCCCu -3'
miRNA:   3'- -GACGUCC-CGaACUUgUAGuUGuCGGG- -5'
8967 3' -52.1 NC_002512.2 + 62863 0.66 0.991866
Target:  5'- -gGCAGGGCagcacgGGGCcgCGAC-GCCg -3'
miRNA:   3'- gaCGUCCCGaa----CUUGuaGUUGuCGGg -5'
8967 3' -52.1 NC_002512.2 + 222895 0.66 0.991755
Target:  5'- cCUGCgacuucgAGGGCUccuGCGUCuggaggcuCGGCCCg -3'
miRNA:   3'- -GACG-------UCCCGAacuUGUAGuu------GUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 209031 0.66 0.991417
Target:  5'- -aGCGGGGCggccgcgucccgGAGCGauucCGACGGCUCc -3'
miRNA:   3'- gaCGUCCCGaa----------CUUGUa---GUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 219817 0.66 0.990706
Target:  5'- -cGCGGGGCgcgacaGGGgGUCGGucggggggucCGGCCCg -3'
miRNA:   3'- gaCGUCCCGaa----CUUgUAGUU----------GUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 199269 0.66 0.990706
Target:  5'- aUGUcGGGCggcccGAACAUCcGC-GCCCu -3'
miRNA:   3'- gACGuCCCGaa---CUUGUAGuUGuCGGG- -5'
8967 3' -52.1 NC_002512.2 + 135483 0.66 0.990706
Target:  5'- -gGUAG-GCg---GCAUCAACAGCCUg -3'
miRNA:   3'- gaCGUCcCGaacuUGUAGUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 91728 0.66 0.990706
Target:  5'- -gGC-GGGUgcGGACAguUCGuCAGCCCg -3'
miRNA:   3'- gaCGuCCCGaaCUUGU--AGUuGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 132700 0.67 0.989421
Target:  5'- -cGCAgacGGGCgucgUGGGCGagaUCcuCGGCCCg -3'
miRNA:   3'- gaCGU---CCCGa---ACUUGU---AGuuGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 72523 0.67 0.989421
Target:  5'- cCUGCccGGcGGCccGGACcUCGGCGGCCa -3'
miRNA:   3'- -GACG--UC-CCGaaCUUGuAGUUGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 175790 0.67 0.989421
Target:  5'- -cGCAGGccgacaGCUUGGcgGCGUCccGGCGGCuCCg -3'
miRNA:   3'- gaCGUCC------CGAACU--UGUAG--UUGUCG-GG- -5'
8967 3' -52.1 NC_002512.2 + 118141 0.67 0.988
Target:  5'- -gGCGGGGgcgGAACcgCGACAuggcgaccguGCCCg -3'
miRNA:   3'- gaCGUCCCgaaCUUGuaGUUGU----------CGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.