miRNA display CGI


Results 101 - 120 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 224931 0.68 0.604392
Target:  5'- cGGGGACCGgguccgugcCGGUgucgcUCgGCUCCGCCGUc- -3'
miRNA:   3'- -CCCCUGGC---------GUCA-----AG-CGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 34890 0.68 0.585564
Target:  5'- cGGGACCGCcg-UCGCCCucuugCGCCGa-- -3'
miRNA:   3'- cCCCUGGCGucaAGCGGG-----GCGGCgac -5'
8967 5' -63 NC_002512.2 + 7458 0.68 0.594966
Target:  5'- gGGGGaaGCCGCGGcgCGgcugccggcCCCCGCCGa-- -3'
miRNA:   3'- -CCCC--UGGCGUCaaGC---------GGGGCGGCgac -5'
8967 5' -63 NC_002512.2 + 49499 0.68 0.594966
Target:  5'- aGGGA--GCGGUUCGUCCCcCCGCa- -3'
miRNA:   3'- cCCCUggCGUCAAGCGGGGcGGCGac -5'
8967 5' -63 NC_002512.2 + 10451 0.69 0.548292
Target:  5'- cGGGGGCgCGgAGgagGCCgCCGCCGCc- -3'
miRNA:   3'- -CCCCUG-GCgUCaagCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 142034 0.69 0.548292
Target:  5'- cGGGGGCCGg----CGaCCCGCCGCg- -3'
miRNA:   3'- -CCCCUGGCgucaaGCgGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 218469 0.69 0.556621
Target:  5'- -cGGACCGCGGUcaucuccUCGUCCCGCgGg-- -3'
miRNA:   3'- ccCCUGGCGUCA-------AGCGGGGCGgCgac -5'
8967 5' -63 NC_002512.2 + 123101 0.69 0.557549
Target:  5'- cGGGuCCgGCGGaacCGUCCCGCCGCc- -3'
miRNA:   3'- cCCCuGG-CGUCaa-GCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 6356 0.69 0.539084
Target:  5'- cGGcGGGCCGCGGgcgcgUGCCguucuCCGCCGUg- -3'
miRNA:   3'- -CC-CCUGGCGUCaa---GCGG-----GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 137301 0.69 0.529929
Target:  5'- cGGGACCGC----CGCCCCucccgGCCGCg- -3'
miRNA:   3'- cCCCUGGCGucaaGCGGGG-----CGGCGac -5'
8967 5' -63 NC_002512.2 + 220388 0.69 0.56685
Target:  5'- uGGGGCCgGCcGUcgUCuaCCCGCCGCUc -3'
miRNA:   3'- cCCCUGG-CGuCA--AGcgGGGCGGCGAc -5'
8967 5' -63 NC_002512.2 + 193900 0.69 0.56685
Target:  5'- cGGGucGCCGCGGUcggcggaucgCGUCCCGgacuCCGCUGa -3'
miRNA:   3'- cCCC--UGGCGUCAa---------GCGGGGC----GGCGAC- -5'
8967 5' -63 NC_002512.2 + 109047 0.69 0.56685
Target:  5'- gGGGGGCuCGgGGgaCGaccggaCCCGCCGCg- -3'
miRNA:   3'- -CCCCUG-GCgUCaaGCg-----GGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 207746 0.69 0.557549
Target:  5'- gGGGGAcgcuCCGgGGUggaGCCgCCGCCGUg- -3'
miRNA:   3'- -CCCCU----GGCgUCAag-CGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 227439 0.69 0.557549
Target:  5'- -cGGGCCGCGGUcaccuUCGCgCUGCCGggGg -3'
miRNA:   3'- ccCCUGGCGUCA-----AGCGgGGCGGCgaC- -5'
8967 5' -63 NC_002512.2 + 206700 0.69 0.557549
Target:  5'- aGGGcGACCGUcg-UCGCCCCGguCCGUUu -3'
miRNA:   3'- -CCC-CUGGCGucaAGCGGGGC--GGCGAc -5'
8967 5' -63 NC_002512.2 + 148520 0.69 0.557549
Target:  5'- aGGcGGCCGCcGccCGCCCCGgCCGCg- -3'
miRNA:   3'- cCC-CUGGCGuCaaGCGGGGC-GGCGac -5'
8967 5' -63 NC_002512.2 + 47696 0.69 0.520832
Target:  5'- cGGGGG-CGguGUUCGCCauccugcgCGCCGCc- -3'
miRNA:   3'- -CCCCUgGCguCAAGCGGg-------GCGGCGac -5'
8967 5' -63 NC_002512.2 + 118767 0.69 0.529929
Target:  5'- -aGGAccCCGCGGgcggCGCCuCCGCCGCc- -3'
miRNA:   3'- ccCCU--GGCGUCaa--GCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 110314 0.69 0.557549
Target:  5'- aGGGGAcccgccgggcucCCGCGGUcCGCCCgGuccCCGCUc -3'
miRNA:   3'- -CCCCU------------GGCGUCAaGCGGGgC---GGCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.