Results 121 - 140 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8967 | 5' | -63 | NC_002512.2 | + | 137301 | 0.69 | 0.529929 |
Target: 5'- cGGGACCGC----CGCCCCucccgGCCGCg- -3' miRNA: 3'- cCCCUGGCGucaaGCGGGG-----CGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 6356 | 0.69 | 0.539084 |
Target: 5'- cGGcGGGCCGCGGgcgcgUGCCguucuCCGCCGUg- -3' miRNA: 3'- -CC-CCUGGCGUCaa---GCGG-----GGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 10451 | 0.69 | 0.548292 |
Target: 5'- cGGGGGCgCGgAGgagGCCgCCGCCGCc- -3' miRNA: 3'- -CCCCUG-GCgUCaagCGG-GGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 142034 | 0.69 | 0.548292 |
Target: 5'- cGGGGGCCGg----CGaCCCGCCGCg- -3' miRNA: 3'- -CCCCUGGCgucaaGCgGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 110314 | 0.69 | 0.557549 |
Target: 5'- aGGGGAcccgccgggcucCCGCGGUcCGCCCgGuccCCGCUc -3' miRNA: 3'- -CCCCU------------GGCGUCAaGCGGGgC---GGCGAc -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 2456 | 0.7 | 0.485097 |
Target: 5'- aGGuGACCGCGGccCGCgCCCGCgCGCg- -3' miRNA: 3'- cCC-CUGGCGUCaaGCG-GGGCG-GCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 67955 | 0.7 | 0.510896 |
Target: 5'- aGGGGuCgCGcCGGUUCGCCguggcguCCGCCGgaGg -3' miRNA: 3'- -CCCCuG-GC-GUCAAGCGG-------GGCGGCgaC- -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 56255 | 0.7 | 0.502826 |
Target: 5'- -cGGAcCCGgGGUUCGCCgCCGCgGCg- -3' miRNA: 3'- ccCCU-GGCgUCAAGCGG-GGCGgCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 200844 | 0.7 | 0.502826 |
Target: 5'- cGGGGG-CGCGGcgCGUCuCUGCCGCa- -3' miRNA: 3'- -CCCCUgGCGUCaaGCGG-GGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 124080 | 0.7 | 0.485097 |
Target: 5'- cGGGGGcuucuCCGCcGUcuUCGCCCuCGCCGUc- -3' miRNA: 3'- -CCCCU-----GGCGuCA--AGCGGG-GCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 20242 | 0.7 | 0.483341 |
Target: 5'- aGGGGcacGCCGCAGccgucgucguccUCGUCCgGCCGCa- -3' miRNA: 3'- -CCCC---UGGCGUCa-----------AGCGGGgCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 124321 | 0.7 | 0.485097 |
Target: 5'- cGGGGCCGCGGcggaCGUgCUGCgGCUGu -3' miRNA: 3'- cCCCUGGCGUCaa--GCGgGGCGgCGAC- -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 157595 | 0.7 | 0.485097 |
Target: 5'- aGGuGAUCGCcggcgcGUUCGCCgccaCGCCGCUGa -3' miRNA: 3'- cCC-CUGGCGu-----CAAGCGGg---GCGGCGAC- -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 118335 | 0.7 | 0.493925 |
Target: 5'- -cGGACgCGCuGGUggagCGCCCCuGCCGCUu -3' miRNA: 3'- ccCCUG-GCG-UCAa---GCGGGG-CGGCGAc -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 49231 | 0.7 | 0.459081 |
Target: 5'- cGGGGccACCGCGG--CGgCCUGCCGCa- -3' miRNA: 3'- -CCCC--UGGCGUCaaGCgGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 122669 | 0.7 | 0.467672 |
Target: 5'- cGGuGACCGCGGcUC-CCCgGCCGCg- -3' miRNA: 3'- cCC-CUGGCGUCaAGcGGGgCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 98103 | 0.7 | 0.467672 |
Target: 5'- cGGGGACggCGCGGgaCGaCCUCGUCGCg- -3' miRNA: 3'- -CCCCUG--GCGUCaaGC-GGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 82325 | 0.7 | 0.476345 |
Target: 5'- -aGGGCCGCGGgcCGCCCCGgCGg-- -3' miRNA: 3'- ccCCUGGCGUCaaGCGGGGCgGCgac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 9748 | 0.7 | 0.476345 |
Target: 5'- uGGGGGCgGCGGagcCGgaCCCGCCGCc- -3' miRNA: 3'- -CCCCUGgCGUCaa-GCg-GGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 60812 | 0.7 | 0.467672 |
Target: 5'- -cGGGCCGCGa--CGCCgCCGCCGCg- -3' miRNA: 3'- ccCCUGGCGUcaaGCGG-GGCGGCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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