Results 61 - 80 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8967 | 5' | -63 | NC_002512.2 | + | 218469 | 0.69 | 0.556621 |
Target: 5'- -cGGACCGCGGUcaucuccUCGUCCCGCgGg-- -3' miRNA: 3'- ccCCUGGCGUCA-------AGCGGGGCGgCgac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 213049 | 0.69 | 0.539084 |
Target: 5'- gGGGGAUCG-AGaUCGCCCUGCCcaGCc- -3' miRNA: 3'- -CCCCUGGCgUCaAGCGGGGCGG--CGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 148520 | 0.69 | 0.557549 |
Target: 5'- aGGcGGCCGCcGccCGCCCCGgCCGCg- -3' miRNA: 3'- cCC-CUGGCGuCaaGCGGGGC-GGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 220388 | 0.69 | 0.56685 |
Target: 5'- uGGGGCCgGCcGUcgUCuaCCCGCCGCUc -3' miRNA: 3'- cCCCUGG-CGuCA--AGcgGGGCGGCGAc -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 123101 | 0.69 | 0.557549 |
Target: 5'- cGGGuCCgGCGGaacCGUCCCGCCGCc- -3' miRNA: 3'- cCCCuGG-CGUCaa-GCGGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 110314 | 0.69 | 0.557549 |
Target: 5'- aGGGGAcccgccgggcucCCGCGGUcCGCCCgGuccCCGCUc -3' miRNA: 3'- -CCCCU------------GGCGUCAaGCGGGgC---GGCGAc -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 137301 | 0.69 | 0.529929 |
Target: 5'- cGGGACCGC----CGCCCCucccgGCCGCg- -3' miRNA: 3'- cCCCUGGCGucaaGCGGGG-----CGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 118767 | 0.69 | 0.529929 |
Target: 5'- -aGGAccCCGCGGgcggCGCCuCCGCCGCc- -3' miRNA: 3'- ccCCU--GGCGUCaa--GCGG-GGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 47696 | 0.69 | 0.520832 |
Target: 5'- cGGGGG-CGguGUUCGCCauccugcgCGCCGCc- -3' miRNA: 3'- -CCCCUgGCguCAAGCGGg-------GCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 106187 | 0.69 | 0.529929 |
Target: 5'- cGGaACCGCugcgccaaCGCCCCGCCGCg- -3' miRNA: 3'- cCCcUGGCGucaa----GCGGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 10451 | 0.69 | 0.548292 |
Target: 5'- cGGGGGCgCGgAGgagGCCgCCGCCGCc- -3' miRNA: 3'- -CCCCUG-GCgUCaagCGG-GGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 6356 | 0.69 | 0.539084 |
Target: 5'- cGGcGGGCCGCGGgcgcgUGCCguucuCCGCCGUg- -3' miRNA: 3'- -CC-CCUGGCGUCaa---GCGG-----GGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 94296 | 0.69 | 0.539084 |
Target: 5'- cGGGGAgCGgucguccaccCGGUUgCGCCCCGgCGCg- -3' miRNA: 3'- -CCCCUgGC----------GUCAA-GCGGGGCgGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 142034 | 0.69 | 0.548292 |
Target: 5'- cGGGGGCCGg----CGaCCCGCCGCg- -3' miRNA: 3'- -CCCCUGGCgucaaGCgGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 175616 | 0.69 | 0.529929 |
Target: 5'- uGGGGugC-CAGggUCGCCgacgCCGCCGCc- -3' miRNA: 3'- -CCCCugGcGUCa-AGCGG----GGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 207746 | 0.69 | 0.557549 |
Target: 5'- gGGGGAcgcuCCGgGGUggaGCCgCCGCCGUg- -3' miRNA: 3'- -CCCCU----GGCgUCAag-CGG-GGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 224715 | 0.68 | 0.604392 |
Target: 5'- uGGGGccgGCCGC----CGCCCCggucgcGCCGCUGc -3' miRNA: 3'- -CCCC---UGGCGucaaGCGGGG------CGGCGAC- -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 111834 | 0.68 | 0.623291 |
Target: 5'- cGGGGuCCGguGgucguagagCGCCgCCGUCGCc- -3' miRNA: 3'- -CCCCuGGCguCaa-------GCGG-GGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 13380 | 0.68 | 0.623291 |
Target: 5'- uGGuGCCGCGGUUCGUCCgcuaccugacgCGCUGCg- -3' miRNA: 3'- cCCcUGGCGUCAAGCGGG-----------GCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 55381 | 0.68 | 0.57619 |
Target: 5'- cGGGaacuGCUGCAGaaccccagCGCCCCGCCgagcgugccGCUGg -3' miRNA: 3'- cCCC----UGGCGUCaa------GCGGGGCGG---------CGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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