Results 101 - 120 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8967 | 5' | -63 | NC_002512.2 | + | 123643 | 0.68 | 0.575254 |
Target: 5'- cGGGGagagcgcGCCGCGGUUC-CCgCGCgCGCg- -3' miRNA: 3'- -CCCC-------UGGCGUCAAGcGGgGCG-GCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 76990 | 0.67 | 0.629914 |
Target: 5'- cGGGGACCGCucccGUUcaccgaccggggacCGCuCCCGCacaccgGCUGc -3' miRNA: 3'- -CCCCUGGCGu---CAA--------------GCG-GGGCGg-----CGAC- -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 107223 | 0.67 | 0.679923 |
Target: 5'- cGGGGAgCCGCGGUcaccgUCGUCCgGCucgaaaCGCa- -3' miRNA: 3'- -CCCCU-GGCGUCA-----AGCGGGgCG------GCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 96893 | 0.67 | 0.679923 |
Target: 5'- cGGGGGCCG-GGUUC-CCCUGCUaCUa -3' miRNA: 3'- -CCCCUGGCgUCAAGcGGGGCGGcGAc -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 149178 | 0.67 | 0.670529 |
Target: 5'- cGGGcCCGCGcgcccUCGCCCCccggacGCCGCUc -3' miRNA: 3'- cCCCuGGCGUca---AGCGGGG------CGGCGAc -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 109082 | 0.67 | 0.669588 |
Target: 5'- cGGGuccgagaGACCGCcgc-CGUCCCGCCGCc- -3' miRNA: 3'- -CCC-------CUGGCGucaaGCGGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 209650 | 0.67 | 0.661108 |
Target: 5'- --cGGCUGCGGcgUGCCCCugucgaugauGCCGCUGg -3' miRNA: 3'- cccCUGGCGUCaaGCGGGG----------CGGCGAC- -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 204665 | 0.67 | 0.657334 |
Target: 5'- gGGGGAUCGCcGgcggcucgcuccCGCUCCGUCGCg- -3' miRNA: 3'- -CCCCUGGCGuCaa----------GCGGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 219388 | 0.67 | 0.651667 |
Target: 5'- uGGGcugccuCCGCuGgUCGgCCCGCCGCg- -3' miRNA: 3'- cCCCu-----GGCGuCaAGCgGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 206891 | 0.67 | 0.651667 |
Target: 5'- cGGGuaggucaccagcGCCGCccg-CGUCCCGCCGCg- -3' miRNA: 3'- cCCC------------UGGCGucaaGCGGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 121772 | 0.67 | 0.679923 |
Target: 5'- cGGGACCGCGGacCGCCgaggcggggaCGCCGaaGa -3' miRNA: 3'- cCCCUGGCGUCaaGCGGg---------GCGGCgaC- -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 173492 | 0.67 | 0.631807 |
Target: 5'- cGGGaGACCu--GUcucgaccUCGCCCCGCCGUc- -3' miRNA: 3'- -CCC-CUGGcguCA-------AGCGGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 50566 | 0.67 | 0.679923 |
Target: 5'- cGGcGCUGCAGgaucugccCGCCUCGCCGCc- -3' miRNA: 3'- cCCcUGGCGUCaa------GCGGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 44985 | 0.67 | 0.679923 |
Target: 5'- aGGGGCaGUAG--CGCCgCCGCcCGCUGa -3' miRNA: 3'- cCCCUGgCGUCaaGCGG-GGCG-GCGAC- -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 218593 | 0.67 | 0.670529 |
Target: 5'- -cGGAUCGCAacUCGUCCCGCUGUg- -3' miRNA: 3'- ccCCUGGCGUcaAGCGGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 93378 | 0.67 | 0.670529 |
Target: 5'- aGGGGaucggGCCGCAGggCGCgCCGaaCGCg- -3' miRNA: 3'- -CCCC-----UGGCGUCaaGCGgGGCg-GCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 4044 | 0.67 | 0.661108 |
Target: 5'- cGGGACaggaGCGGcUCGaucCCCCGCgGCUc -3' miRNA: 3'- cCCCUGg---CGUCaAGC---GGGGCGgCGAc -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 129880 | 0.67 | 0.632753 |
Target: 5'- gGGGGAuUCGCcg-UCGCCCuCGCCGaCg- -3' miRNA: 3'- -CCCCU-GGCGucaAGCGGG-GCGGC-Gac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 116737 | 0.67 | 0.632753 |
Target: 5'- --cGGCCGCGGcgaggccggCGCCCCGCgCGCg- -3' miRNA: 3'- cccCUGGCGUCaa-------GCGGGGCG-GCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 133646 | 0.67 | 0.632753 |
Target: 5'- uGGcGGAguCCGgGGcggUCGCCgCCGCCGCc- -3' miRNA: 3'- -CC-CCU--GGCgUCa--AGCGG-GGCGGCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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