miRNA display CGI


Results 81 - 100 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 55381 0.68 0.57619
Target:  5'- cGGGaacuGCUGCAGaaccccagCGCCCCGCCgagcgugccGCUGg -3'
miRNA:   3'- cCCC----UGGCGUCaa------GCGGGGCGG---------CGAC- -5'
8967 5' -63 NC_002512.2 + 146673 0.68 0.579935
Target:  5'- cGGGACCGacgcucccccCGCCCCGCgCGCg- -3'
miRNA:   3'- cCCCUGGCgucaa-----GCGGGGCG-GCGac -5'
8967 5' -63 NC_002512.2 + 34890 0.68 0.585564
Target:  5'- cGGGACCGCcg-UCGCCCucuugCGCCGa-- -3'
miRNA:   3'- cCCCUGGCGucaAGCGGG-----GCGGCgac -5'
8967 5' -63 NC_002512.2 + 3256 0.68 0.585564
Target:  5'- -cGGuCCGCGGgcUCgGUCCCGUCGCUGc -3'
miRNA:   3'- ccCCuGGCGUCa-AG-CGGGGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 227189 0.68 0.594966
Target:  5'- gGGGGAgCgGCAGg-CGCuCCCGCgCGCg- -3'
miRNA:   3'- -CCCCU-GgCGUCaaGCG-GGGCG-GCGac -5'
8967 5' -63 NC_002512.2 + 135238 0.68 0.594966
Target:  5'- -cGGGCCGCcucgAGgccgUCGUCCgCGCCGCg- -3'
miRNA:   3'- ccCCUGGCG----UCa---AGCGGG-GCGGCGac -5'
8967 5' -63 NC_002512.2 + 49499 0.68 0.594966
Target:  5'- aGGGA--GCGGUUCGUCCCcCCGCa- -3'
miRNA:   3'- cCCCUggCGUCAAGCGGGGcGGCGac -5'
8967 5' -63 NC_002512.2 + 7458 0.68 0.594966
Target:  5'- gGGGGaaGCCGCGGcgCGgcugccggcCCCCGCCGa-- -3'
miRNA:   3'- -CCCC--UGGCGUCaaGC---------GGGGCGGCgac -5'
8967 5' -63 NC_002512.2 + 155679 0.68 0.594966
Target:  5'- cGGGACCGCGGcccacggaCGUCgCCGCC-CUGu -3'
miRNA:   3'- cCCCUGGCGUCaa------GCGG-GGCGGcGAC- -5'
8967 5' -63 NC_002512.2 + 155046 0.68 0.604392
Target:  5'- cGGGaGGCCccuccgaaccgaGUuGUUCGuCCgCCGCCGCUGc -3'
miRNA:   3'- -CCC-CUGG------------CGuCAAGC-GG-GGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 94538 0.68 0.604392
Target:  5'- gGGGGACCGCcGUUC-CagCGCCGUg- -3'
miRNA:   3'- -CCCCUGGCGuCAAGcGggGCGGCGac -5'
8967 5' -63 NC_002512.2 + 224931 0.68 0.604392
Target:  5'- cGGGGACCGgguccgugcCGGUgucgcUCgGCUCCGCCGUc- -3'
miRNA:   3'- -CCCCUGGC---------GUCA-----AG-CGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 224715 0.68 0.604392
Target:  5'- uGGGGccgGCCGC----CGCCCCggucgcGCCGCUGc -3'
miRNA:   3'- -CCCC---UGGCGucaaGCGGGG------CGGCGAC- -5'
8967 5' -63 NC_002512.2 + 80725 0.68 0.613836
Target:  5'- cGGGcCCGCGGgcggcaccgGCCCCGCgGCg- -3'
miRNA:   3'- cCCCuGGCGUCaag------CGGGGCGgCGac -5'
8967 5' -63 NC_002512.2 + 116605 0.68 0.613836
Target:  5'- cGGGaggcccGCCGCGGc-UGCCCCGCCGg-- -3'
miRNA:   3'- cCCC------UGGCGUCaaGCGGGGCGGCgac -5'
8967 5' -63 NC_002512.2 + 76917 0.68 0.620454
Target:  5'- cGGGGACCGCucc-CGCCgacccgaccggggaCCGCuccCGCUGa -3'
miRNA:   3'- -CCCCUGGCGucaaGCGG--------------GGCG---GCGAC- -5'
8967 5' -63 NC_002512.2 + 45711 0.68 0.623291
Target:  5'- cGGGGuaguugaagaCGCAGaaacUCuCCCCGCUGCUGu -3'
miRNA:   3'- -CCCCug--------GCGUCa---AGcGGGGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 13380 0.68 0.623291
Target:  5'- uGGuGCCGCGGUUCGUCCgcuaccugacgCGCUGCg- -3'
miRNA:   3'- cCCcUGGCGUCAAGCGGG-----------GCGGCGac -5'
8967 5' -63 NC_002512.2 + 19190 0.68 0.623291
Target:  5'- cGGGuGAucucCCGCGG--CGCCuuGCCGUUGc -3'
miRNA:   3'- -CCC-CU----GGCGUCaaGCGGggCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 111834 0.68 0.623291
Target:  5'- cGGGGuCCGguGgucguagagCGCCgCCGUCGCc- -3'
miRNA:   3'- -CCCCuGGCguCaa-------GCGG-GGCGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.