miRNA display CGI


Results 101 - 120 of 180 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 112977 0.68 0.627075
Target:  5'- cGGGGAcgccguccgaggagcCCGCcccg-GCCCCGCCGCc- -3'
miRNA:   3'- -CCCCU---------------GGCGucaagCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 76990 0.67 0.629914
Target:  5'- cGGGGACCGCucccGUUcaccgaccggggacCGCuCCCGCacaccgGCUGc -3'
miRNA:   3'- -CCCCUGGCGu---CAA--------------GCG-GGGCGg-----CGAC- -5'
8967 5' -63 NC_002512.2 + 173492 0.67 0.631807
Target:  5'- cGGGaGACCu--GUcucgaccUCGCCCCGCCGUc- -3'
miRNA:   3'- -CCC-CUGGcguCA-------AGCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 116737 0.67 0.632753
Target:  5'- --cGGCCGCGGcgaggccggCGCCCCGCgCGCg- -3'
miRNA:   3'- cccCUGGCGUCaa-------GCGGGGCG-GCGac -5'
8967 5' -63 NC_002512.2 + 133646 0.67 0.632753
Target:  5'- uGGcGGAguCCGgGGcggUCGCCgCCGCCGCc- -3'
miRNA:   3'- -CC-CCU--GGCgUCa--AGCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 100010 0.67 0.632753
Target:  5'- aGGGcGACgGCGaaUC-CCCCGCCGCc- -3'
miRNA:   3'- -CCC-CUGgCGUcaAGcGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 205032 0.67 0.632753
Target:  5'- cGGGGCCGC-GUcCGCCgCCgaccgGCCGCg- -3'
miRNA:   3'- cCCCUGGCGuCAaGCGG-GG-----CGGCGac -5'
8967 5' -63 NC_002512.2 + 129880 0.67 0.632753
Target:  5'- gGGGGAuUCGCcg-UCGCCCuCGCCGaCg- -3'
miRNA:   3'- -CCCCU-GGCGucaAGCGGG-GCGGC-Gac -5'
8967 5' -63 NC_002512.2 + 113512 0.67 0.640322
Target:  5'- cGGGGACCGCAGggCcagcaugacccuCCCCGucucCCGgUGg -3'
miRNA:   3'- -CCCCUGGCGUCaaGc-----------GGGGC----GGCgAC- -5'
8967 5' -63 NC_002512.2 + 224979 0.67 0.642213
Target:  5'- uGGGcGGCgGCGGcggCGCCCucuucccguCGCCGCUc -3'
miRNA:   3'- -CCC-CUGgCGUCaa-GCGGG---------GCGGCGAc -5'
8967 5' -63 NC_002512.2 + 195771 0.67 0.645996
Target:  5'- uGGGGACCaacgugagccuggacGUGGgcgugUUGCUCCGCUGCg- -3'
miRNA:   3'- -CCCCUGG---------------CGUCa----AGCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 126809 0.67 0.650723
Target:  5'- cGGGAucgccucCCGUAGUcCGUCCCGUCGUc- -3'
miRNA:   3'- cCCCU-------GGCGUCAaGCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 206891 0.67 0.651667
Target:  5'- cGGGuaggucaccagcGCCGCccg-CGUCCCGCCGCg- -3'
miRNA:   3'- cCCC------------UGGCGucaaGCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 219388 0.67 0.651667
Target:  5'- uGGGcugccuCCGCuGgUCGgCCCGCCGCg- -3'
miRNA:   3'- cCCCu-----GGCGuCaAGCgGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 152730 0.67 0.651667
Target:  5'- aGGGGACaCGCAGaggCGUUCCgGCCGg-- -3'
miRNA:   3'- -CCCCUG-GCGUCaa-GCGGGG-CGGCgac -5'
8967 5' -63 NC_002512.2 + 149632 0.67 0.651667
Target:  5'- gGGaGGACCGCAcGga-GCCCgGcCCGCa- -3'
miRNA:   3'- -CC-CCUGGCGU-CaagCGGGgC-GGCGac -5'
8967 5' -63 NC_002512.2 + 204665 0.67 0.657334
Target:  5'- gGGGGAUCGCcGgcggcucgcuccCGCUCCGUCGCg- -3'
miRNA:   3'- -CCCCUGGCGuCaa----------GCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 209650 0.67 0.661108
Target:  5'- --cGGCUGCGGcgUGCCCCugucgaugauGCCGCUGg -3'
miRNA:   3'- cccCUGGCGUCaaGCGGGG----------CGGCGAC- -5'
8967 5' -63 NC_002512.2 + 4044 0.67 0.661108
Target:  5'- cGGGACaggaGCGGcUCGaucCCCCGCgGCUc -3'
miRNA:   3'- cCCCUGg---CGUCaAGC---GGGGCGgCGAc -5'
8967 5' -63 NC_002512.2 + 109082 0.67 0.669588
Target:  5'- cGGGuccgagaGACCGCcgc-CGUCCCGCCGCc- -3'
miRNA:   3'- -CCC-------CUGGCGucaaGCGGGGCGGCGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.