miRNA display CGI


Results 61 - 80 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 94671 0.72 0.370646
Target:  5'- cGGGGCCGgGGggCcCCCCGgcCCGCUGg -3'
miRNA:   3'- cCCCUGGCgUCaaGcGGGGC--GGCGAC- -5'
8967 5' -63 NC_002512.2 + 94973 0.71 0.409397
Target:  5'- aGGuGGCUGCGGaUCGCCCCGUCGa-- -3'
miRNA:   3'- cCC-CUGGCGUCaAGCGGGGCGGCgac -5'
8967 5' -63 NC_002512.2 + 95031 0.66 0.705099
Target:  5'- gGGGGGCggucaggcugugcgUGUAGUagGCCuCCGCCGUc- -3'
miRNA:   3'- -CCCCUG--------------GCGUCAagCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 96289 0.71 0.409397
Target:  5'- gGGGGcuGCCGCGG---GCCgCCGCCGCg- -3'
miRNA:   3'- -CCCC--UGGCGUCaagCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 96893 0.67 0.679923
Target:  5'- cGGGGGCCG-GGUUC-CCCUGCUaCUa -3'
miRNA:   3'- -CCCCUGGCgUCAAGcGGGGCGGcGAc -5'
8967 5' -63 NC_002512.2 + 98103 0.7 0.467672
Target:  5'- cGGGGACggCGCGGgaCGaCCUCGUCGCg- -3'
miRNA:   3'- -CCCCUG--GCGUCaaGC-GGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 98583 0.66 0.698603
Target:  5'- -cGGGCgGCGGgUCGUCCgCGCUGCa- -3'
miRNA:   3'- ccCCUGgCGUCaAGCGGG-GCGGCGac -5'
8967 5' -63 NC_002512.2 + 99659 0.66 0.726248
Target:  5'- cGGGGCC-CAGagguuCCCCGCCGCc- -3'
miRNA:   3'- cCCCUGGcGUCaagc-GGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 100010 0.67 0.632753
Target:  5'- aGGGcGACgGCGaaUC-CCCCGCCGCc- -3'
miRNA:   3'- -CCC-CUGgCGUcaAGcGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 100498 0.66 0.707876
Target:  5'- gGGGaGGCCGCGGUcgUCGagcaCCCGCaCGa-- -3'
miRNA:   3'- -CCC-CUGGCGUCA--AGCg---GGGCG-GCgac -5'
8967 5' -63 NC_002512.2 + 102886 0.66 0.689283
Target:  5'- gGGGGACC-CGGguaCGaCCCG-CGCUGg -3'
miRNA:   3'- -CCCCUGGcGUCaa-GCgGGGCgGCGAC- -5'
8967 5' -63 NC_002512.2 + 103099 0.75 0.241827
Target:  5'- cGGGGACgggCGCGGcacgcgUCGCCgCCGCCGCc- -3'
miRNA:   3'- -CCCCUG---GCGUCa-----AGCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 105447 0.66 0.717093
Target:  5'- cGGGGuuccuCCGCAGgacguucgUCGUCCCG-UGCa- -3'
miRNA:   3'- -CCCCu----GGCGUCa-------AGCGGGGCgGCGac -5'
8967 5' -63 NC_002512.2 + 106187 0.69 0.529929
Target:  5'- cGGaACCGCugcgccaaCGCCCCGCCGCg- -3'
miRNA:   3'- cCCcUGGCGucaa----GCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 106305 0.66 0.744343
Target:  5'- --cGACCGCGGgcccgUCGUccagCCCGUCGCUc -3'
miRNA:   3'- cccCUGGCGUCa----AGCG----GGGCGGCGAc -5'
8967 5' -63 NC_002512.2 + 107223 0.67 0.679923
Target:  5'- cGGGGAgCCGCGGUcaccgUCGUCCgGCucgaaaCGCa- -3'
miRNA:   3'- -CCCCU-GGCGUCA-----AGCGGGgCG------GCGac -5'
8967 5' -63 NC_002512.2 + 107963 0.73 0.355863
Target:  5'- cGGGACCGCcgccgccUCGUCCCGCuCGCUc -3'
miRNA:   3'- cCCCUGGCGuca----AGCGGGGCG-GCGAc -5'
8967 5' -63 NC_002512.2 + 108906 0.66 0.717093
Target:  5'- cGGGGCC-C-GUUCGCCggUGCUGCUGg -3'
miRNA:   3'- cCCCUGGcGuCAAGCGGg-GCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 109047 0.69 0.56685
Target:  5'- gGGGGGCuCGgGGgaCGaccggaCCCGCCGCg- -3'
miRNA:   3'- -CCCCUG-GCgUCaaGCg-----GGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 109082 0.67 0.669588
Target:  5'- cGGGuccgagaGACCGCcgc-CGUCCCGCCGCc- -3'
miRNA:   3'- -CCC-------CUGGCGucaaGCGGGGCGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.