miRNA display CGI


Results 81 - 100 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 110207 0.66 0.744343
Target:  5'- aGGGGugCG-GGUgUCGCUuaaugagggCCGCCGCg- -3'
miRNA:   3'- -CCCCugGCgUCA-AGCGG---------GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 110314 0.69 0.557549
Target:  5'- aGGGGAcccgccgggcucCCGCGGUcCGCCCgGuccCCGCUc -3'
miRNA:   3'- -CCCCU------------GGCGUCAaGCGGGgC---GGCGAc -5'
8967 5' -63 NC_002512.2 + 111834 0.68 0.623291
Target:  5'- cGGGGuCCGguGgucguagagCGCCgCCGUCGCc- -3'
miRNA:   3'- -CCCCuGGCguCaa-------GCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 112770 0.66 0.698603
Target:  5'- ---cGCCGCGGg--GCCCCguGCCGCUGu -3'
miRNA:   3'- ccccUGGCGUCaagCGGGG--CGGCGAC- -5'
8967 5' -63 NC_002512.2 + 112977 0.68 0.627075
Target:  5'- cGGGGAcgccguccgaggagcCCGCcccg-GCCCCGCCGCc- -3'
miRNA:   3'- -CCCCU---------------GGCGucaagCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 113512 0.67 0.640322
Target:  5'- cGGGGACCGCAGggCcagcaugacccuCCCCGucucCCGgUGg -3'
miRNA:   3'- -CCCCUGGCGUCaaGc-----------GGGGC----GGCgAC- -5'
8967 5' -63 NC_002512.2 + 115900 0.66 0.744343
Target:  5'- cGGGACCau-GUUCaCCCUGCUGCa- -3'
miRNA:   3'- cCCCUGGcguCAAGcGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 116605 0.68 0.613836
Target:  5'- cGGGaggcccGCCGCGGc-UGCCCCGCCGg-- -3'
miRNA:   3'- cCCC------UGGCGUCaaGCGGGGCGGCgac -5'
8967 5' -63 NC_002512.2 + 116737 0.67 0.632753
Target:  5'- --cGGCCGCGGcgaggccggCGCCCCGCgCGCg- -3'
miRNA:   3'- cccCUGGCGUCaa-------GCGGGGCG-GCGac -5'
8967 5' -63 NC_002512.2 + 118335 0.7 0.493925
Target:  5'- -cGGACgCGCuGGUggagCGCCCCuGCCGCUu -3'
miRNA:   3'- ccCCUG-GCG-UCAa---GCGGGG-CGGCGAc -5'
8967 5' -63 NC_002512.2 + 118767 0.69 0.529929
Target:  5'- -aGGAccCCGCGGgcggCGCCuCCGCCGCc- -3'
miRNA:   3'- ccCCU--GGCGUCaa--GCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 119587 0.72 0.363203
Target:  5'- cGGGuccccucgcGCCaGCAGUgUCGCCCuCGCCGCUc -3'
miRNA:   3'- cCCC---------UGG-CGUCA-AGCGGG-GCGGCGAc -5'
8967 5' -63 NC_002512.2 + 120874 0.66 0.698603
Target:  5'- cGGGuCCGCAGgacgaCGCCgCCGgCGCc- -3'
miRNA:   3'- cCCCuGGCGUCaa---GCGG-GGCgGCGac -5'
8967 5' -63 NC_002512.2 + 121458 0.7 0.459081
Target:  5'- aGGGGuCCGCcc--CGCgCCCGCCGCc- -3'
miRNA:   3'- -CCCCuGGCGucaaGCG-GGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 121772 0.67 0.679923
Target:  5'- cGGGACCGCGGacCGCCgaggcggggaCGCCGaaGa -3'
miRNA:   3'- cCCCUGGCGUCaaGCGGg---------GCGGCgaC- -5'
8967 5' -63 NC_002512.2 + 122669 0.7 0.467672
Target:  5'- cGGuGACCGCGGcUC-CCCgGCCGCg- -3'
miRNA:   3'- cCC-CUGGCGUCaAGcGGGgCGGCGac -5'
8967 5' -63 NC_002512.2 + 123101 0.69 0.557549
Target:  5'- cGGGuCCgGCGGaacCGUCCCGCCGCc- -3'
miRNA:   3'- cCCCuGG-CGUCaa-GCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 123643 0.68 0.575254
Target:  5'- cGGGGagagcgcGCCGCGGUUC-CCgCGCgCGCg- -3'
miRNA:   3'- -CCCC-------UGGCGUCAAGcGGgGCG-GCGac -5'
8967 5' -63 NC_002512.2 + 124080 0.7 0.485097
Target:  5'- cGGGGGcuucuCCGCcGUcuUCGCCCuCGCCGUc- -3'
miRNA:   3'- -CCCCU-----GGCGuCA--AGCGGG-GCGGCGac -5'
8967 5' -63 NC_002512.2 + 124321 0.7 0.485097
Target:  5'- cGGGGCCGCGGcggaCGUgCUGCgGCUGu -3'
miRNA:   3'- cCCCUGGCGUCaa--GCGgGGCGgCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.