miRNA display CGI


Results 121 - 140 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 146673 0.68 0.579935
Target:  5'- cGGGACCGacgcucccccCGCCCCGCgCGCg- -3'
miRNA:   3'- cCCCUGGCgucaa-----GCGGGGCG-GCGac -5'
8967 5' -63 NC_002512.2 + 148520 0.69 0.557549
Target:  5'- aGGcGGCCGCcGccCGCCCCGgCCGCg- -3'
miRNA:   3'- cCC-CUGGCGuCaaGCGGGGC-GGCGac -5'
8967 5' -63 NC_002512.2 + 149178 0.67 0.670529
Target:  5'- cGGGcCCGCGcgcccUCGCCCCccggacGCCGCUc -3'
miRNA:   3'- cCCCuGGCGUca---AGCGGGG------CGGCGAc -5'
8967 5' -63 NC_002512.2 + 149232 0.75 0.264233
Target:  5'- cGGGACCGaCGGacccggCGCCgCCGCCGCg- -3'
miRNA:   3'- cCCCUGGC-GUCaa----GCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 149632 0.67 0.651667
Target:  5'- gGGaGGACCGCAcGga-GCCCgGcCCGCa- -3'
miRNA:   3'- -CC-CCUGGCGU-CaagCGGGgC-GGCGac -5'
8967 5' -63 NC_002512.2 + 150070 0.73 0.334476
Target:  5'- gGGGGACCGC----CGCCgCCGCCGUc- -3'
miRNA:   3'- -CCCCUGGCGucaaGCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 150682 0.69 0.520832
Target:  5'- cGGGcGCgGCGG-UCGCCCCGacggaCCGUUGg -3'
miRNA:   3'- -CCCcUGgCGUCaAGCGGGGC-----GGCGAC- -5'
8967 5' -63 NC_002512.2 + 152730 0.67 0.651667
Target:  5'- aGGGGACaCGCAGaggCGUUCCgGCCGg-- -3'
miRNA:   3'- -CCCCUG-GCGUCaa-GCGGGG-CGGCgac -5'
8967 5' -63 NC_002512.2 + 154591 0.74 0.294573
Target:  5'- aGGGcGACgGCGGcaucgUCGCCgCCGCCGCc- -3'
miRNA:   3'- -CCC-CUGgCGUCa----AGCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 154931 0.75 0.241827
Target:  5'- gGGcGGACCGCuc-UCGUCCCGUCGCUc -3'
miRNA:   3'- -CC-CCUGGCGucaAGCGGGGCGGCGAc -5'
8967 5' -63 NC_002512.2 + 155046 0.68 0.604392
Target:  5'- cGGGaGGCCccuccgaaccgaGUuGUUCGuCCgCCGCCGCUGc -3'
miRNA:   3'- -CCC-CUGG------------CGuCAAGC-GG-GGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 155379 0.66 0.726248
Target:  5'- cGGGACCGCgaggcuggcgaGGUccucucCGUCCUGUCGCUc -3'
miRNA:   3'- cCCCUGGCG-----------UCAa-----GCGGGGCGGCGAc -5'
8967 5' -63 NC_002512.2 + 155427 0.66 0.689283
Target:  5'- cGGGAgugccCCGUcGUcgUGuCCCCGCUGCUGa -3'
miRNA:   3'- cCCCU-----GGCGuCAa-GC-GGGGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 155679 0.68 0.594966
Target:  5'- cGGGACCGCGGcccacggaCGUCgCCGCC-CUGu -3'
miRNA:   3'- cCCCUGGCGUCaa------GCGG-GGCGGcGAC- -5'
8967 5' -63 NC_002512.2 + 157595 0.7 0.485097
Target:  5'- aGGuGAUCGCcggcgcGUUCGCCgccaCGCCGCUGa -3'
miRNA:   3'- cCC-CUGGCGu-----CAAGCGGg---GCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 164261 0.66 0.717093
Target:  5'- cGGGGGCCGUcgGGUcgaUCGCCUCGg-GCUu -3'
miRNA:   3'- -CCCCUGGCG--UCA---AGCGGGGCggCGAc -5'
8967 5' -63 NC_002512.2 + 171906 0.66 0.726248
Target:  5'- cGGGACuCGgugauaGGUUCGUcgcccucuucgCCCGCCGCg- -3'
miRNA:   3'- cCCCUG-GCg-----UCAAGCG-----------GGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 173492 0.67 0.631807
Target:  5'- cGGGaGACCu--GUcucgaccUCGCCCCGCCGUc- -3'
miRNA:   3'- -CCC-CUGGcguCA-------AGCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 174336 0.66 0.707876
Target:  5'- cGGGGGuCCGCcg--CGCCCuCGuCCGCc- -3'
miRNA:   3'- -CCCCU-GGCGucaaGCGGG-GC-GGCGac -5'
8967 5' -63 NC_002512.2 + 175616 0.69 0.529929
Target:  5'- uGGGGugC-CAGggUCGCCgacgCCGCCGCc- -3'
miRNA:   3'- -CCCCugGcGUCa-AGCGG----GGCGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.