miRNA display CGI


Results 141 - 160 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 177021 0.68 0.57619
Target:  5'- -aGGGCCGCcuGcgCGUCCCGCCaGUUGa -3'
miRNA:   3'- ccCCUGGCGu-CaaGCGGGGCGG-CGAC- -5'
8967 5' -63 NC_002512.2 + 183515 0.66 0.744343
Target:  5'- gGGGaGGCCGUcc-UCGCCUgGCUGCg- -3'
miRNA:   3'- -CCC-CUGGCGucaAGCGGGgCGGCGac -5'
8967 5' -63 NC_002512.2 + 186768 0.66 0.707876
Target:  5'- gGGGGGUCGCGGUcUCGUuuucucagcuUCUGCCGCa- -3'
miRNA:   3'- -CCCCUGGCGUCA-AGCG----------GGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 187294 0.71 0.433826
Target:  5'- -cGGGCUuCGGgucCGCCCCGCCGCUc -3'
miRNA:   3'- ccCCUGGcGUCaa-GCGGGGCGGCGAc -5'
8967 5' -63 NC_002512.2 + 192576 0.75 0.252826
Target:  5'- cGGGGCCucggaGCGGacCGUCCCGCUGCUGc -3'
miRNA:   3'- cCCCUGG-----CGUCaaGCGGGGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 192880 0.66 0.744343
Target:  5'- cGGGGACgcauauaagCGCcGUcgCGCUCCGCgGCg- -3'
miRNA:   3'- -CCCCUG---------GCGuCAa-GCGGGGCGgCGac -5'
8967 5' -63 NC_002512.2 + 193002 0.7 0.459081
Target:  5'- -uGGACCGCGGgcgcCGCCCUGCCcacCUGc -3'
miRNA:   3'- ccCCUGGCGUCaa--GCGGGGCGGc--GAC- -5'
8967 5' -63 NC_002512.2 + 193900 0.69 0.56685
Target:  5'- cGGGucGCCGCGGUcggcggaucgCGUCCCGgacuCCGCUGa -3'
miRNA:   3'- cCCC--UGGCGUCAa---------GCGGGGC----GGCGAC- -5'
8967 5' -63 NC_002512.2 + 195771 0.67 0.645996
Target:  5'- uGGGGACCaacgugagccuggacGUGGgcgugUUGCUCCGCUGCg- -3'
miRNA:   3'- -CCCCUGG---------------CGUCa----AGCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 200844 0.7 0.502826
Target:  5'- cGGGGG-CGCGGcgCGUCuCUGCCGCa- -3'
miRNA:   3'- -CCCCUgGCGUCaaGCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 202290 0.7 0.459081
Target:  5'- uGGGACCGgGGcgcCGUgCCGCCGCg- -3'
miRNA:   3'- cCCCUGGCgUCaa-GCGgGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 204665 0.67 0.657334
Target:  5'- gGGGGAUCGCcGgcggcucgcuccCGCUCCGUCGCg- -3'
miRNA:   3'- -CCCCUGGCGuCaa----------GCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 205032 0.67 0.632753
Target:  5'- cGGGGCCGC-GUcCGCCgCCgaccgGCCGCg- -3'
miRNA:   3'- cCCCUGGCGuCAaGCGG-GG-----CGGCGac -5'
8967 5' -63 NC_002512.2 + 205582 0.97 0.007925
Target:  5'- gGGGGA-CGCAGUUCGCCCCGCCGCUGu -3'
miRNA:   3'- -CCCCUgGCGUCAAGCGGGGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 206700 0.69 0.557549
Target:  5'- aGGGcGACCGUcg-UCGCCCCGguCCGUUu -3'
miRNA:   3'- -CCC-CUGGCGucaAGCGGGGC--GGCGAc -5'
8967 5' -63 NC_002512.2 + 206891 0.67 0.651667
Target:  5'- cGGGuaggucaccagcGCCGCccg-CGUCCCGCCGCg- -3'
miRNA:   3'- cCCC------------UGGCGucaaGCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 207530 0.68 0.57619
Target:  5'- cGGGGCCGCG--UCcUCCCGCUGCg- -3'
miRNA:   3'- cCCCUGGCGUcaAGcGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 207746 0.69 0.557549
Target:  5'- gGGGGAcgcuCCGgGGUggaGCCgCCGCCGUg- -3'
miRNA:   3'- -CCCCU----GGCgUCAag-CGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 208817 0.7 0.476345
Target:  5'- cGGGACCGCcgcccGUgCGCCCucacgCGCCGCg- -3'
miRNA:   3'- cCCCUGGCGu----CAaGCGGG-----GCGGCGac -5'
8967 5' -63 NC_002512.2 + 209650 0.67 0.661108
Target:  5'- --cGGCUGCGGcgUGCCCCugucgaugauGCCGCUGg -3'
miRNA:   3'- cccCUGGCGUCaaGCGGGG----------CGGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.