miRNA display CGI


Results 61 - 80 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 142620 0.66 0.744343
Target:  5'- --cGACCGCGuGUUCGCUCC-CCGgaGa -3'
miRNA:   3'- cccCUGGCGU-CAAGCGGGGcGGCgaC- -5'
8967 5' -63 NC_002512.2 + 142034 0.69 0.548292
Target:  5'- cGGGGGCCGg----CGaCCCGCCGCg- -3'
miRNA:   3'- -CCCCUGGCgucaaGCgGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 141432 0.66 0.697673
Target:  5'- aGGGGACU-------GCCCCGCCuGCUGg -3'
miRNA:   3'- -CCCCUGGcgucaagCGGGGCGG-CGAC- -5'
8967 5' -63 NC_002512.2 + 140203 0.71 0.442156
Target:  5'- --cGACCGUAcaucUCGCCCCGCCGCc- -3'
miRNA:   3'- cccCUGGCGUca--AGCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 139429 0.78 0.167604
Target:  5'- cGGGGAcCCGCAGcUgGCCCgGCCGCc- -3'
miRNA:   3'- -CCCCU-GGCGUCaAgCGGGgCGGCGac -5'
8967 5' -63 NC_002512.2 + 137301 0.69 0.529929
Target:  5'- cGGGACCGC----CGCCCCucccgGCCGCg- -3'
miRNA:   3'- cCCCUGGCGucaaGCGGGG-----CGGCGac -5'
8967 5' -63 NC_002512.2 + 137082 0.66 0.717093
Target:  5'- cGGGAacaggcCCGCGGUgugCGCCCagGCgCGCg- -3'
miRNA:   3'- cCCCU------GGCGUCAa--GCGGGg-CG-GCGac -5'
8967 5' -63 NC_002512.2 + 135810 0.7 0.485097
Target:  5'- cGGGGacGCCGaCGGUccCGuUCCCGCCGCg- -3'
miRNA:   3'- -CCCC--UGGC-GUCAa-GC-GGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 135238 0.68 0.594966
Target:  5'- -cGGGCCGCcucgAGgccgUCGUCCgCGCCGCg- -3'
miRNA:   3'- ccCCUGGCG----UCa---AGCGGG-GCGGCGac -5'
8967 5' -63 NC_002512.2 + 134759 0.71 0.432998
Target:  5'- gGGcGGACCGUccGGUUCGUcggcgggCCCGCCGUc- -3'
miRNA:   3'- -CC-CCUGGCG--UCAAGCG-------GGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 134569 0.68 0.57619
Target:  5'- cGGGGACU-----UCG-CCCGCCGCUGc -3'
miRNA:   3'- -CCCCUGGcgucaAGCgGGGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 133879 0.66 0.689283
Target:  5'- cGGGGcguuccGCCugGCGGUcgcggCGCCggacgccgaCCGCCGCUGc -3'
miRNA:   3'- -CCCC------UGG--CGUCAa----GCGG---------GGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 133646 0.67 0.632753
Target:  5'- uGGcGGAguCCGgGGcggUCGCCgCCGCCGCc- -3'
miRNA:   3'- -CC-CCU--GGCgUCa--AGCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 133240 0.66 0.717093
Target:  5'- gGGaGGGCgGCGG--CGCCCCgGUCGCg- -3'
miRNA:   3'- -CC-CCUGgCGUCaaGCGGGG-CGGCGac -5'
8967 5' -63 NC_002512.2 + 131040 0.75 0.270092
Target:  5'- cGGGGCCGCGGgggaggacggCGCCgCGCCGgaGg -3'
miRNA:   3'- cCCCUGGCGUCaa--------GCGGgGCGGCgaC- -5'
8967 5' -63 NC_002512.2 + 129880 0.67 0.632753
Target:  5'- gGGGGAuUCGCcg-UCGCCCuCGCCGaCg- -3'
miRNA:   3'- -CCCCU-GGCGucaAGCGGG-GCGGC-Gac -5'
8967 5' -63 NC_002512.2 + 129187 0.75 0.270092
Target:  5'- cGGGGacGCUGCGGaggagGCCgCCGCCGCUGg -3'
miRNA:   3'- -CCCC--UGGCGUCaag--CGG-GGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 127409 0.66 0.726248
Target:  5'- cGGGACCGCcaccgcgacgGGcgCGCCCUccuCCGCg- -3'
miRNA:   3'- cCCCUGGCG----------UCaaGCGGGGc--GGCGac -5'
8967 5' -63 NC_002512.2 + 126809 0.67 0.650723
Target:  5'- cGGGAucgccucCCGUAGUcCGUCCCGUCGUc- -3'
miRNA:   3'- cCCCU-------GGCGUCAaGCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 126457 0.66 0.707876
Target:  5'- cGGcGGCCGCcuuGUUCGCCgucgUCGUCGCg- -3'
miRNA:   3'- cCC-CUGGCGu--CAAGCGG----GGCGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.