Results 81 - 100 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8967 | 5' | -63 | NC_002512.2 | + | 124321 | 0.7 | 0.485097 |
Target: 5'- cGGGGCCGCGGcggaCGUgCUGCgGCUGu -3' miRNA: 3'- cCCCUGGCGUCaa--GCGgGGCGgCGAC- -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 124080 | 0.7 | 0.485097 |
Target: 5'- cGGGGGcuucuCCGCcGUcuUCGCCCuCGCCGUc- -3' miRNA: 3'- -CCCCU-----GGCGuCA--AGCGGG-GCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 123643 | 0.68 | 0.575254 |
Target: 5'- cGGGGagagcgcGCCGCGGUUC-CCgCGCgCGCg- -3' miRNA: 3'- -CCCC-------UGGCGUCAAGcGGgGCG-GCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 123101 | 0.69 | 0.557549 |
Target: 5'- cGGGuCCgGCGGaacCGUCCCGCCGCc- -3' miRNA: 3'- cCCCuGG-CGUCaa-GCGGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 122669 | 0.7 | 0.467672 |
Target: 5'- cGGuGACCGCGGcUC-CCCgGCCGCg- -3' miRNA: 3'- cCC-CUGGCGUCaAGcGGGgCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 121772 | 0.67 | 0.679923 |
Target: 5'- cGGGACCGCGGacCGCCgaggcggggaCGCCGaaGa -3' miRNA: 3'- cCCCUGGCGUCaaGCGGg---------GCGGCgaC- -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 121458 | 0.7 | 0.459081 |
Target: 5'- aGGGGuCCGCcc--CGCgCCCGCCGCc- -3' miRNA: 3'- -CCCCuGGCGucaaGCG-GGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 120874 | 0.66 | 0.698603 |
Target: 5'- cGGGuCCGCAGgacgaCGCCgCCGgCGCc- -3' miRNA: 3'- cCCCuGGCGUCaa---GCGG-GGCgGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 119587 | 0.72 | 0.363203 |
Target: 5'- cGGGuccccucgcGCCaGCAGUgUCGCCCuCGCCGCUc -3' miRNA: 3'- cCCC---------UGG-CGUCA-AGCGGG-GCGGCGAc -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 118767 | 0.69 | 0.529929 |
Target: 5'- -aGGAccCCGCGGgcggCGCCuCCGCCGCc- -3' miRNA: 3'- ccCCU--GGCGUCaa--GCGG-GGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 118335 | 0.7 | 0.493925 |
Target: 5'- -cGGACgCGCuGGUggagCGCCCCuGCCGCUu -3' miRNA: 3'- ccCCUG-GCG-UCAa---GCGGGG-CGGCGAc -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 116737 | 0.67 | 0.632753 |
Target: 5'- --cGGCCGCGGcgaggccggCGCCCCGCgCGCg- -3' miRNA: 3'- cccCUGGCGUCaa-------GCGGGGCG-GCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 116605 | 0.68 | 0.613836 |
Target: 5'- cGGGaggcccGCCGCGGc-UGCCCCGCCGg-- -3' miRNA: 3'- cCCC------UGGCGUCaaGCGGGGCGGCgac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 115900 | 0.66 | 0.744343 |
Target: 5'- cGGGACCau-GUUCaCCCUGCUGCa- -3' miRNA: 3'- cCCCUGGcguCAAGcGGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 113512 | 0.67 | 0.640322 |
Target: 5'- cGGGGACCGCAGggCcagcaugacccuCCCCGucucCCGgUGg -3' miRNA: 3'- -CCCCUGGCGUCaaGc-----------GGGGC----GGCgAC- -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 112977 | 0.68 | 0.627075 |
Target: 5'- cGGGGAcgccguccgaggagcCCGCcccg-GCCCCGCCGCc- -3' miRNA: 3'- -CCCCU---------------GGCGucaagCGGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 112770 | 0.66 | 0.698603 |
Target: 5'- ---cGCCGCGGg--GCCCCguGCCGCUGu -3' miRNA: 3'- ccccUGGCGUCaagCGGGG--CGGCGAC- -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 111834 | 0.68 | 0.623291 |
Target: 5'- cGGGGuCCGguGgucguagagCGCCgCCGUCGCc- -3' miRNA: 3'- -CCCCuGGCguCaa-------GCGG-GGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 110314 | 0.69 | 0.557549 |
Target: 5'- aGGGGAcccgccgggcucCCGCGGUcCGCCCgGuccCCGCUc -3' miRNA: 3'- -CCCCU------------GGCGUCAaGCGGGgC---GGCGAc -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 110207 | 0.66 | 0.744343 |
Target: 5'- aGGGGugCG-GGUgUCGCUuaaugagggCCGCCGCg- -3' miRNA: 3'- -CCCCugGCgUCA-AGCGG---------GGCGGCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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