Results 121 - 140 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8967 | 5' | -63 | NC_002512.2 | + | 94538 | 0.68 | 0.604392 |
Target: 5'- gGGGGACCGCcGUUC-CagCGCCGUg- -3' miRNA: 3'- -CCCCUGGCGuCAAGcGggGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 94296 | 0.69 | 0.539084 |
Target: 5'- cGGGGAgCGgucguccaccCGGUUgCGCCCCGgCGCg- -3' miRNA: 3'- -CCCCUgGC----------GUCAA-GCGGGGCgGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 94080 | 0.74 | 0.282122 |
Target: 5'- cGGGACCGUcgg-CGuCCCCGCCGCg- -3' miRNA: 3'- cCCCUGGCGucaaGC-GGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 93378 | 0.67 | 0.670529 |
Target: 5'- aGGGGaucggGCCGCAGggCGCgCCGaaCGCg- -3' miRNA: 3'- -CCCC-----UGGCGUCaaGCGgGGCg-GCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 92520 | 0.66 | 0.726248 |
Target: 5'- cGGGaGACCGCgcGGaUCuaCCCGgCCGCg- -3' miRNA: 3'- -CCC-CUGGCG--UCaAGcgGGGC-GGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 88668 | 0.74 | 0.294573 |
Target: 5'- cGGGGACCGCccgaaccCGCCCCgGCUGCg- -3' miRNA: 3'- -CCCCUGGCGucaa---GCGGGG-CGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 87981 | 0.75 | 0.264233 |
Target: 5'- cGGGGCCGCGG--CGCCCCGaCGCg- -3' miRNA: 3'- cCCCUGGCGUCaaGCGGGGCgGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 83163 | 0.76 | 0.231229 |
Target: 5'- cGGcGGCCGCGGccgcCGCCCCGCCGUc- -3' miRNA: 3'- cCC-CUGGCGUCaa--GCGGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 82325 | 0.7 | 0.476345 |
Target: 5'- -aGGGCCGCGGgcCGCCCCGgCGg-- -3' miRNA: 3'- ccCCUGGCGUCaaGCGGGGCgGCgac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 80725 | 0.68 | 0.613836 |
Target: 5'- cGGGcCCGCGGgcggcaccgGCCCCGCgGCg- -3' miRNA: 3'- cCCCuGGCGUCaag------CGGGGCGgCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 77535 | 0.66 | 0.744343 |
Target: 5'- cGGGACCGgAGa-CGCCUaCGUCGCg- -3' miRNA: 3'- cCCCUGGCgUCaaGCGGG-GCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 76990 | 0.67 | 0.629914 |
Target: 5'- cGGGGACCGCucccGUUcaccgaccggggacCGCuCCCGCacaccgGCUGc -3' miRNA: 3'- -CCCCUGGCGu---CAA--------------GCG-GGGCGg-----CGAC- -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 76917 | 0.68 | 0.620454 |
Target: 5'- cGGGGACCGCucc-CGCCgacccgaccggggaCCGCuccCGCUGa -3' miRNA: 3'- -CCCCUGGCGucaaGCGG--------------GGCG---GCGAC- -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 75293 | 0.66 | 0.743446 |
Target: 5'- cGGcGGcgacgauGCCGCcg-UCGCCCuCGCCGUUa -3' miRNA: 3'- -CC-CC-------UGGCGucaAGCGGG-GCGGCGAc -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 73371 | 0.66 | 0.707876 |
Target: 5'- -cGGACCcCcg--CGCCCCGCCGCc- -3' miRNA: 3'- ccCCUGGcGucaaGCGGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 70895 | 0.76 | 0.211209 |
Target: 5'- cGGGGCCGCcgccucCGCCCCGCCGUg- -3' miRNA: 3'- cCCCUGGCGucaa--GCGGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 70730 | 0.75 | 0.252826 |
Target: 5'- gGGGGACgGgAGcgCGCCCgGCCGCc- -3' miRNA: 3'- -CCCCUGgCgUCaaGCGGGgCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 67955 | 0.7 | 0.510896 |
Target: 5'- aGGGGuCgCGcCGGUUCGCCguggcguCCGCCGgaGg -3' miRNA: 3'- -CCCCuG-GC-GUCAAGCGG-------GGCGGCgaC- -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 66006 | 0.66 | 0.698603 |
Target: 5'- uGGGGGucUCGCAG--CGCUCCGuCCGgUGg -3' miRNA: 3'- -CCCCU--GGCGUCaaGCGGGGC-GGCgAC- -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 63887 | 0.66 | 0.705099 |
Target: 5'- cGGaGCCGUcgggagAGUUgacgaagaaccgacCGCCCCGCCGCa- -3' miRNA: 3'- cCCcUGGCG------UCAA--------------GCGGGGCGGCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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