Results 41 - 60 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8967 | 5' | -63 | NC_002512.2 | + | 70730 | 0.75 | 0.252826 |
Target: 5'- gGGGGACgGgAGcgCGCCCgGCCGCc- -3' miRNA: 3'- -CCCCUGgCgUCaaGCGGGgCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 103099 | 0.75 | 0.241827 |
Target: 5'- cGGGGACgggCGCGGcacgcgUCGCCgCCGCCGCc- -3' miRNA: 3'- -CCCCUG---GCGUCa-----AGCGG-GGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 83163 | 0.76 | 0.231229 |
Target: 5'- cGGcGGCCGCGGccgcCGCCCCGCCGUc- -3' miRNA: 3'- cCC-CUGGCGUCaa--GCGGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 70895 | 0.76 | 0.211209 |
Target: 5'- cGGGGCCGCcgccucCGCCCCGCCGUg- -3' miRNA: 3'- cCCCUGGCGucaa--GCGGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 139429 | 0.78 | 0.167604 |
Target: 5'- cGGGGAcCCGCAGcUgGCCCgGCCGCc- -3' miRNA: 3'- -CCCCU-GGCGUCaAgCGGGgCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 134759 | 0.71 | 0.432998 |
Target: 5'- gGGcGGACCGUccGGUUCGUcggcgggCCCGCCGUc- -3' miRNA: 3'- -CC-CCUGGCG--UCAAGCG-------GGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 10745 | 0.71 | 0.447196 |
Target: 5'- aGGuGGACaGCAGguagagcgcgucgUCgGCCCCGCCGCg- -3' miRNA: 3'- -CC-CCUGgCGUCa------------AG-CGGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 118767 | 0.69 | 0.529929 |
Target: 5'- -aGGAccCCGCGGgcggCGCCuCCGCCGCc- -3' miRNA: 3'- ccCCU--GGCGUCaa--GCGG-GGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 47696 | 0.69 | 0.520832 |
Target: 5'- cGGGGG-CGguGUUCGCCauccugcgCGCCGCc- -3' miRNA: 3'- -CCCCUgGCguCAAGCGGg-------GCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 67955 | 0.7 | 0.510896 |
Target: 5'- aGGGGuCgCGcCGGUUCGCCguggcguCCGCCGgaGg -3' miRNA: 3'- -CCCCuG-GC-GUCAAGCGG-------GGCGGCgaC- -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 56255 | 0.7 | 0.502826 |
Target: 5'- -cGGAcCCGgGGUUCGCCgCCGCgGCg- -3' miRNA: 3'- ccCCU-GGCgUCAAGCGG-GGCGgCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 124080 | 0.7 | 0.485097 |
Target: 5'- cGGGGGcuucuCCGCcGUcuUCGCCCuCGCCGUc- -3' miRNA: 3'- -CCCCU-----GGCGuCA--AGCGGG-GCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 2456 | 0.7 | 0.485097 |
Target: 5'- aGGuGACCGCGGccCGCgCCCGCgCGCg- -3' miRNA: 3'- cCC-CUGGCGUCaaGCG-GGGCG-GCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 20242 | 0.7 | 0.483341 |
Target: 5'- aGGGGcacGCCGCAGccgucgucguccUCGUCCgGCCGCa- -3' miRNA: 3'- -CCCC---UGGCGUCa-----------AGCGGGgCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 9748 | 0.7 | 0.476345 |
Target: 5'- uGGGGGCgGCGGagcCGgaCCCGCCGCc- -3' miRNA: 3'- -CCCCUGgCGUCaa-GCg-GGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 82325 | 0.7 | 0.476345 |
Target: 5'- -aGGGCCGCGGgcCGCCCCGgCGg-- -3' miRNA: 3'- ccCCUGGCGUCaaGCGGGGCgGCgac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 98103 | 0.7 | 0.467672 |
Target: 5'- cGGGGACggCGCGGgaCGaCCUCGUCGCg- -3' miRNA: 3'- -CCCCUG--GCGUCaaGC-GGGGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 122669 | 0.7 | 0.467672 |
Target: 5'- cGGuGACCGCGGcUC-CCCgGCCGCg- -3' miRNA: 3'- cCC-CUGGCGUCaAGcGGGgCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 60812 | 0.7 | 0.467672 |
Target: 5'- -cGGGCCGCGa--CGCCgCCGCCGCg- -3' miRNA: 3'- ccCCUGGCGUcaaGCGG-GGCGGCGac -5' |
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8967 | 5' | -63 | NC_002512.2 | + | 49231 | 0.7 | 0.459081 |
Target: 5'- cGGGGccACCGCGG--CGgCCUGCCGCa- -3' miRNA: 3'- -CCCC--UGGCGUCaaGCgGGGCGGCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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